Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5372 |
Symbol | |
ID | 7975833 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 78440 |
End bp | 79318 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644795966 |
Product | malonate decarboxylase subunit beta |
Protein accession | YP_002947240 |
Protein GI | 239820055 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0777] Acetyl-CoA carboxylase beta subunit |
TIGRFAM ID | [TIGR03133] malonate decarboxylase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00542603 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCAGCT ATGCCGAATG CTCGGCGCGC GAGCGGCTGG CGCTGCTGCT CGACGCCGGC AGTTTTCACG AATGGCTGCC GCCGAGCGAG CGGGTCATGA GCCCGCACCT CGCGCAGCTT GGCGTGCCCT CGGCCTTCGA TGACGGCGTG GCGATCGGCC GCGCGATGCT GGGTGGCCGC GAGGTCTTCG CGGCTGCGCA GGAAGGCGCG TTCATGGGCG GCGGCGTGGG CGAGGTGCAC GGCGCCAAGC TGGTCGGCCT GCTGCAGCGC GCGCTGCGCG ACCGGCCGGC GGCGGTGCTG CTGCTGGCCG AATCGGGCGG CGTGCGGTTG CACGAGGCCA ACGCCGGCCT CATCGCGGTG TCGGAAGTGA TGCGCGCCGT GCTCGACGTG CGCGCCGCGG GCATACCGGT CATCGTGCTG ATCGGCGGCG CCAACGGTTG CTTCGGCGGC ATGGGCATCG TGGCGCGCTG CGCCGACCAC ATCGTGATGA GCGATGTCGG GCGGCTCGCG ATGTCGGGCC CGGAAGTGAT CGAGGCCTCC CACGGCGTGG ATGAATTCGA CTCGCGCGAC CGGGCACTGG TCTGGCGCAC GACCGGCGGC AAGCACCGCT GGCTGACCGG CGATTGCGAT GCGCTGGTCG AGGACGACGT CGCGGAATTC CGCGCAGCCG CCATCGCGGC GCTCGACCGG CAGCGGCCGC TGACCCAGGC GGCGCTGGAG CAGGAGCACA GCCTGCTCAC GCAGCGCCTG CATGCCCTGC CGGACGGCGA CGCCGGCGGC GACGAAGCGA CGCTGCTCTG GCGCGCGCTC GGCATTGCCG GCGCGGAAAA CGTCCCGGAC CTTCCGGTGG AAGCGGTGCG CGCGCTGCGC ACCCTGTGA
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Protein sequence | MISYAECSAR ERLALLLDAG SFHEWLPPSE RVMSPHLAQL GVPSAFDDGV AIGRAMLGGR EVFAAAQEGA FMGGGVGEVH GAKLVGLLQR ALRDRPAAVL LLAESGGVRL HEANAGLIAV SEVMRAVLDV RAAGIPVIVL IGGANGCFGG MGIVARCADH IVMSDVGRLA MSGPEVIEAS HGVDEFDSRD RALVWRTTGG KHRWLTGDCD ALVEDDVAEF RAAAIAALDR QRPLTQAALE QEHSLLTQRL HALPDGDAGG DEATLLWRAL GIAGAENVPD LPVEAVRALR TL
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