Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5342 |
Symbol | |
ID | 7975803 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 46165 |
End bp | 46920 |
Gene Length | 756 bp |
Protein Length | 251 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644795936 |
Product | acetoacetyl-CoA reductase |
Protein accession | YP_002947210 |
Protein GI | 239820025 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | [TIGR01829] acetoacetyl-CoA reductase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.684648 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGAAA GCAAGCAGCA ACAAGTGGTC CTGGTCACCG GCGGCATGGG CGGCCTGGGC GAGACGATCT CCACCAAGAT GGTCGATGCG GGCTACAAGC TCGCGGTGAC CTATTCGCCC GGCAACAAGT CGCACGCCGA CTGGGTCGCA CAGATGGCCG GGCGCGGCTA CCAGATCCTG GCCGTGCCCT GCGACGTGGC CGACTACGAC TCCTGCGCAC GGGCGGTGGG CCAGGTGCAG GAAGCCCTGG GCCCGGTCGA CGTGCTGGTC AACAACGCCG GCATCACGCG CGACATGACC TTCAAGAAGA TGGACCAGAT CAACTGGAAC GCCGTGCTGC GCACCAACCT CGACAGCCTG TTCAACATGA GCAAGCAGGT GGCCGACGGC ATGGTGGAGC GGGGCTGGGG CCGCATCATC AACGTGTCGT CGGTGAACGG CTCGAAGGGT GCGTTCGGGC AGACCAACTA CTCGGCCGCC AAGGCCGGGG TGCACGGCTT CACCAAGGCG CTGGCGCTCG AAGTGGCCAG GAAGGGCGTG ACCGTGAACA CCATCTCGCC CGGCTACATC GGCACGAAGA TGGTCACGGC CATTCCGAAG GAAGTGCTCG ACAGCAAGAT CCTGCCGCAC ATTCCCGTGG GGCGCCTGGG CAAGCCCGAG GAAGTGGCGG GGCTGATCAT CTACCTGGCC TCGGAAGAGG CGGCCTTCGT GACGGGCGCC AACATCGCCA TCAACGGCGG CCAGCACATG CAATGA
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Protein sequence | MSESKQQQVV LVTGGMGGLG ETISTKMVDA GYKLAVTYSP GNKSHADWVA QMAGRGYQIL AVPCDVADYD SCARAVGQVQ EALGPVDVLV NNAGITRDMT FKKMDQINWN AVLRTNLDSL FNMSKQVADG MVERGWGRII NVSSVNGSKG AFGQTNYSAA KAGVHGFTKA LALEVARKGV TVNTISPGYI GTKMVTAIPK EVLDSKILPH IPVGRLGKPE EVAGLIIYLA SEEAAFVTGA NIAINGGQHM Q
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