| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5328 |
|---|
| Symbol | |
|---|
| ID | 7975789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 26548 |
|---|
| End bp | 27795 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644795922 |
|---|
| Product | Mandelate racemase/muconate lactonizing protein |
|---|
| Protein accession | YP_002947196 |
|---|
| Protein GI | 239820011 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACCC TCATCACCGA CGTCAAAGTC ATCCTCACGG CGCCCGAAGG CATCAACCTC
GTCGTCGTGA AGGTGGAAAC CAACCAGCCC GGGCTCTTCG GCCTCGGCTG CGCAACCTTC
TCGTACCGGC ACTTGGCCGT GCAGTGCCTC GTCGAGCAGT ACCTGCGGCC GCTGCTCATT
GGCCGCGACG CGAGCGCGAT CGAGGAGCTC TGGCAGCTCA TGCACCAGAA CGCCTACTGG
CGCAACGGAC CCGTGGAGAA CAACGCGATC TCGGGTGTCG ACATGGCGCT GTGGGACCTC
AAGGGCAAGA TGGCCGGCAT GCCGCTCTAC CAGCTCTTCG GCGGCAAGTG CCGCGAGGGC
GTGCCGGTCT ACCGCCACGC CGACGGCAGC AGCCTGAGCG AGCTGTGCGA CAACATCCAG
AAGTATCGCG AGCAGGGCAT CACCCACGTG CGCTGCCAGA GCGGCGGCTA CGGCGGCGGC
AGCTTCGCCC CGGCGCCAGC CGGCGCGCCG CGCGGTTCGG CGAACGGCAT CTACCTCGAT
GGCAAGAAGT ACATGCGTGA GACGATCGCG CTCTTCGACG GCCTTCGCAG CAAGCTCGGC
TTCGATGTGG CCCTGTGCCA TGACGTGCAC GAGCGGCTCA AGCCCGTCGA TGCCATCCGT
CTTGCATGCG AGCTCGAGCC TTTCGACCTG TTCTTTCTTG AAGATGCGAT CCCGCTCGAA
GAGGGCGCCT GGATTCGCCA GCTGCGCGAG AAGACCACGA CACCGCTTGC GCAGGGCGAA
CTCTTCAACA ACCCCGCGGA GTGGAAATTC CTGATCACCG AACAGCTGAT CGACTACATC
CGCGTCCACC TGAGCCAGAT CGGCGGCATC ACACCCGGGC GCAAGCTGCA GATCTTCGCC
GAGCAGTTCG GCGTGAAGAC GGCCTGGCAT GGCCCCGGCG ACATGTCGCC GCTCGGCCAT
GCGGCCAACA TCCACATTGA CTTGGCGGCA CGCAACTTCG GCGTGCAGGA ATGGTCGGGC
ATCGAACCAC CGAACTTCGT GATCCAGGAC CTCAAGGGCC CGCGCGGTGC CTTGCTCGAC
GTGTTCCCGG GTCTGCCCGA ATTCAGGGAC GGCTACGTCT ACGCGAACGA CAAGCCCGGC
CTAGGCGTGG ACATCGACGA AGCCGAGGCA ATGAAGTACC CGTGCGAGAA CACGGTCACG
ACCTGGACGC AGACGCGCCT CATCGACGGC ACGCTGCAGA CGCCGTAG
|
|---|
| Protein sequence | MATLITDVKV ILTAPEGINL VVVKVETNQP GLFGLGCATF SYRHLAVQCL VEQYLRPLLI
GRDASAIEEL WQLMHQNAYW RNGPVENNAI SGVDMALWDL KGKMAGMPLY QLFGGKCREG
VPVYRHADGS SLSELCDNIQ KYREQGITHV RCQSGGYGGG SFAPAPAGAP RGSANGIYLD
GKKYMRETIA LFDGLRSKLG FDVALCHDVH ERLKPVDAIR LACELEPFDL FFLEDAIPLE
EGAWIRQLRE KTTTPLAQGE LFNNPAEWKF LITEQLIDYI RVHLSQIGGI TPGRKLQIFA
EQFGVKTAWH GPGDMSPLGH AANIHIDLAA RNFGVQEWSG IEPPNFVIQD LKGPRGALLD
VFPGLPEFRD GYVYANDKPG LGVDIDEAEA MKYPCENTVT TWTQTRLIDG TLQTP
|
|---|
| |