| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5252 |
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| Symbol | |
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| ID | 7972685 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5573102 |
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| End bp | 5574172 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795846 |
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| Product | peptidase M4 thermolysin |
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| Protein accession | YP_002947120 |
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| Protein GI | 239818210 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3227] Zinc metalloprotease (elastase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0068319 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGCTTC GCTCGCCGAG CCTTTTACCG CCCAGCTTCG TACCGCCGTA CCTGCTGGAC
CGGCTGGCGC AACATGCCGG TGCGCATGCC AGCGCGAAGG CGGCGCAGAC GCTGATGATC
GACCTGCAGC ACCGCGGCCT GCGCGAGGCG GTGGCCGGGC AGGGCGTGTC GTCGGGCCCC
GCGCCCAGCT ATGTGCGGCG CGGCTCGCCC GCGCGCGCCA TCCACGACGC AGAGCACACC
ATGGTCCTGC CGGGGCGGCT GGTGCGTGCC GAAGGACAGG CCGCCACCGG CGACATCGCC
GCCGACGAGG CCTACGACTA CCTGGGCGCC ACCTACCGCC TGTACCACGA CATCTTCGAG
CGCGATTCCA TCGACGGCGC GGGCATGCCG CTCACGGGCA GCGTGCACTA CGGCAACGAC
TACGACAACG CCTTCTGGAA CGGCCAGCAG ATGGTGTTCG GCGACGGCGA CGGCGAGGTC
ATGAACCGCT TCACCATCGC GGTGGACATC ATCGGCCACG AGCTCACGCA CGGCGTGATC
GACCACGAGT CGGGCCTGGT CTACCAGGGG CAGCCGGGCG CGCTCAACGA GTCGATCTGC
GACGTGTTCG GCGCGCTGGT CAAGCAGCAC CTGCTCAAGC AGACCGCGCA GCAGGCCGAC
TGGCTGGTCG GCGCGGGGCT CTTCACCGGC AAGGTCAAGG CGCGCGCACT GCGCTCGATG
GCCGAGCCCG GCACGGCCTA CGACGACCCG GTGCTCGGCA AGGACCCGCA GCCTGCCCAC
ATGAAGGACT TTGTCGACAC GCGCCAGGAC AATGGCGGCG TGCACATCAA TTCCGGCATT
CCGAACCGCG CCTTCCATCT CGCTGCCACG GCCATCCAGG GCCCGGCATG GGAGACGGCC
GGGCGCGTCT GGTACGACAC GGTGTGCGAC CGGCGGCTGC GCCAGGACGC CGATTTCCTG
GCCTTCGCGC AGCTCAGCGT GGAAAATGCA GCCAGGCGCT TCGGCGCCGG CAGCGCGGCG
CACCAGGCCG TCGGCGCTAC ATGGAACACC GTGGGAGTCA CACCATCATG A
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| Protein sequence | MPLRSPSLLP PSFVPPYLLD RLAQHAGAHA SAKAAQTLMI DLQHRGLREA VAGQGVSSGP
APSYVRRGSP ARAIHDAEHT MVLPGRLVRA EGQAATGDIA ADEAYDYLGA TYRLYHDIFE
RDSIDGAGMP LTGSVHYGND YDNAFWNGQQ MVFGDGDGEV MNRFTIAVDI IGHELTHGVI
DHESGLVYQG QPGALNESIC DVFGALVKQH LLKQTAQQAD WLVGAGLFTG KVKARALRSM
AEPGTAYDDP VLGKDPQPAH MKDFVDTRQD NGGVHINSGI PNRAFHLAAT AIQGPAWETA
GRVWYDTVCD RRLRQDADFL AFAQLSVENA ARRFGAGSAA HQAVGATWNT VGVTPS
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