Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5204 |
Symbol | |
ID | 7969863 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 5527723 |
End bp | 5528652 |
Gene Length | 930 bp |
Protein Length | 309 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644795798 |
Product | transcriptional regulator, LysR family |
Protein accession | YP_002947072 |
Protein GI | 239818162 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.647866 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGCTCC GCCGCCTCAA CCCGCCGCTG AACCTGCTGC GCGCCTTTTC CACCGTGGTG CGCTTCGGCG GCGTCTCGCG CGCCGCCGAG GCGCTGCACC TCACGCAGGG CGCGGTCAGC AAGCAGGTGC AGGAACTGGA GCGCTGGATC GGCGTGCCGC TGTTCGAGCG CAGCCGCAAG CGCCTGGCGC TCACGCCCGC GGGCGAGCGC TACGAAAAAG CCGTGCGCGC CCTGCTCGCG CAGCTGGAGG CGGCCACGCT GGAATTCATC ACCAGCGGCG ACGGCGGCGG CGCGCTGCAC CTGTCCACCC TGCCCACCTT CGGCGCCAAG TGGCTGATTC CGCGCCTGCC CGACTTCCAG CGCCTGCATC CGCAGATCAC GCTGCATTTC GTGCCCTTCG TGCATGGCTA CGACTTCGAG CGCCCCGAGC TCGACTGCGC CATCCTCTTC GGCGACGGCC ATTGGCCCGG CGCGCGCTCG CACTACCTGG CCGGGCGCGA CGTGGCGCTG ATCGCGCCGC GCGCGGGCCT GGCCGAAGCC GCCATCCGCA CGCCGCAGGA CGTGGCGCGC TGCACCCTGC TGCGCCACGT CACGGTGCCG CAGTCGTGGC TGCAATGGAG CGAGGCGCAT GGCGTGCGCG GGCTCGATCC GCTGGCCGGC CCGCAGTTCG ACCAGTTCCA GACCATGATC CGCGCGGTGA TGGTGGGCAT GGGCGTGGCG CTGGTGCCGC GCTGCCTGGT GCAGGACGAG ATCGCCTCGG GGCTGGTGGA CGAGCCGCTG CCGGGCGGCG GCTACCGCGG CGACCAGGGC TACTGGTTCT GCTACCCCGA GGGCCGCGGC CAGCTGGCCA CGCTCGACCA CTTCCGCCGC TGGCTGCTGG CGGATGCCGA TCGCAGCGCG GAGGAGCAGG CGCCGCCGGC CCTTGCCTGA
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Protein sequence | MSLRRLNPPL NLLRAFSTVV RFGGVSRAAE ALHLTQGAVS KQVQELERWI GVPLFERSRK RLALTPAGER YEKAVRALLA QLEAATLEFI TSGDGGGALH LSTLPTFGAK WLIPRLPDFQ RLHPQITLHF VPFVHGYDFE RPELDCAILF GDGHWPGARS HYLAGRDVAL IAPRAGLAEA AIRTPQDVAR CTLLRHVTVP QSWLQWSEAH GVRGLDPLAG PQFDQFQTMI RAVMVGMGVA LVPRCLVQDE IASGLVDEPL PGGGYRGDQG YWFCYPEGRG QLATLDHFRR WLLADADRSA EEQAPPALA
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