| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5178 |
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| Symbol | |
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| ID | 7969837 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5498283 |
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| End bp | 5499980 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795772 |
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| Product | O-antigen polymerase |
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| Protein accession | YP_002947046 |
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| Protein GI | 239818136 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGCCG ACATTGCCCA CGCTCAAAAG CTTGCGACTG AGCGTGCACT TTTCTTGGCT
CGGTCGGGGC TGGTCGCATT CCCATTCCTC TGCCCGCTCG TCGCCGGCCC GTCGGTCCAG
GCCTGGCAGC TGCTGGCCAC CTGGGTCTGC CTGGCGGCGA TGCTTCTGGT CATTCCTGCC
GCCACTCCGT CGCGCGGCAT CTGGGCCTGG CTGGGCGCCG GAGCAGTGGC GGTCGTGCTT
TTTTCGTCAC CACATGCCGG CGCCGCTGCA TGGTTACCGC CCGTGGTCGT GCTCGCCGCC
ATGGCGGCCG CGGCCTGCGT GGGCGCGGGC ATGGTGCGCG GCGGGCCGGG CACCTCGGGG
GCGCTGGCGA TGGGCGTGCT GGTGGCCGGC CTTGTCAGCG CCGTGCTGGG CCTGCTCCAG
TACTACGGCC TGGCCGAGCC GCTGGTGCCT TGGACCACCA CGCCCGCGCT GGGCCAGGCC
TATGGCAACC TGCGCCAGCG CAACCAGTTC GCCACGCTGA TCAGCATGGC GCTGGTGGCT
GCGCTCTGGA TCTACGCGGC GCAGCCCTCG GCGCGCATCC GGCGCTGGCT GGTGGCGGCG
GCGCTGTTGC TGCTGGTGGC CGCGGCGGCG TCCACTTCGC GCACGGGCCT GCTCCAGCTG
CTGTCGATCG TGGGTGTTGC GGCGTTCATC GCGCGGCGGG AGCGCCGCGG CGTGGCCCCG
GATGACGCTG CCGGCGCGCC GCCCTTCAGC CTGCCGCCGC CGCTGGTGCT GCTGGCGATG
ATCCCGGTCT ATTTCGCCAT CGCCTGGCTG CTGCCGCAGC TGGCGGCGGG CGAGGTCGAG
GGCATGATGC AGCGGCTGCA GGAGGGCGCG CCAGGCGACC ACACGCGGAT GATCCTGTGG
CGCAACGTGC TCTCGCTGAT TGCCGCGCAT CCGCTCGCGG GGTGGGGCTG GGGCGAGCTG
GCCTTCGCGC ACTACAGCAC GCTGTACGAC GGGCCGCGCT TCCCCGAGAT ATTGGACAAC
GCGCACAACC TGCCGCTGCA CCTGGCGGTG GAAATGGGCA TTCCGGTGTC GGTGCTGGTC
TGCGGCGGCT TCGTCTGGAT GGTGTTGGCG GCCAGGCCCT GGCGCGAGCG CGATTCGGTG
CGGCTCATGG CCTGGGGCAT GCTGGGCGCG ATCGCGCTGC ACAGCCTGCT CGAATATCCG
CTCTGGTACG GGCCGTTCCA GCTGGTGTTC GGGCTGTGCC TGGGCATGCT GTGGCCGGCG
CGGGGTGCCG ACGCGGTTTT GCCGCCAGTC TTGTCTTCCA TCGCGGCCGC GGTGCTGATG
GCGGTGGTCG GCTATGCCAC CTGGGACTAC ATCCGCATCA GCCAGATCTA CGTGGCGCGC
GACGAGCGCC TGCCGGCCTA TGAAGACGGC ACGCTCGCCA AGGCCAGGAA ATCGTGGCTC
TTTGCCAGGC AGGTCGACTT TGCCGAGCTC ACGCTCACGG CTGTCACGCC GGACAACGCC
GCCGCGATGC ATTCACTGGC CGAGCGCACG CTGCACTTCT CGCCCGAGCC GCGGGTGATC
GTCAAGCTGA TCGAGAGCGC CGAGCTGATG GGGCGGCGCG ACGAGGCGCG CGACCAGGCG
GAGCGTTTTC GCATCGCCTT TCCGTCGGAG TACGAGCGCT GGCTGAAAGG GCTGCCGGTA
GACGGGCAGG CGCCCTAG
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| Protein sequence | MTADIAHAQK LATERALFLA RSGLVAFPFL CPLVAGPSVQ AWQLLATWVC LAAMLLVIPA
ATPSRGIWAW LGAGAVAVVL FSSPHAGAAA WLPPVVVLAA MAAAACVGAG MVRGGPGTSG
ALAMGVLVAG LVSAVLGLLQ YYGLAEPLVP WTTTPALGQA YGNLRQRNQF ATLISMALVA
ALWIYAAQPS ARIRRWLVAA ALLLLVAAAA STSRTGLLQL LSIVGVAAFI ARRERRGVAP
DDAAGAPPFS LPPPLVLLAM IPVYFAIAWL LPQLAAGEVE GMMQRLQEGA PGDHTRMILW
RNVLSLIAAH PLAGWGWGEL AFAHYSTLYD GPRFPEILDN AHNLPLHLAV EMGIPVSVLV
CGGFVWMVLA ARPWRERDSV RLMAWGMLGA IALHSLLEYP LWYGPFQLVF GLCLGMLWPA
RGADAVLPPV LSSIAAAVLM AVVGYATWDY IRISQIYVAR DERLPAYEDG TLAKARKSWL
FARQVDFAEL TLTAVTPDNA AAMHSLAERT LHFSPEPRVI VKLIESAELM GRRDEARDQA
ERFRIAFPSE YERWLKGLPV DGQAP
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