| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5176 |
|---|
| Symbol | |
|---|
| ID | 7969835 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5496175 |
|---|
| End bp | 5497740 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644795770 |
|---|
| Product | peptidase M48 Ste24p |
|---|
| Protein accession | YP_002947044 |
|---|
| Protein GI | 239818134 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCGCT TGACTCCCTT TGCCACCAAA AAGACTTCCG CCGCGCCCGC TCTGCGGTCG
CTCTGCGCTA CCGTTTTAAT AGCCTGCCAG GTGCTGCTGC CGGTACCGGC CCGCGCCCAG
ATGCAGGTGC TGCCGGGCCT GGGCGACGGC GGCGAAATGA CCGCCAGCGC CGAGCGCCAG
CTGGGCGACC AGATTGCGCG CGAGCTCTAC CGCGACACCG ACTACATCGA CGACCCGGTG
ATCGCCGCCT ACGTGCAGGA CATCTGGCAG CGCCTTTTGG CCGCCGCACG CCAGCGCGGC
GAGCTCACGC CCGAGCTCGA CGAGCGCTTT GCCTGGACCA TCCTGCTGGG GCGCGACCGC
AACATCAATG CCTTTGCGCT GCCGGGCGGC TACCTGGGCC TGAACATGGG GCTGATTGCC
ACGGTGGGCA GCCGCGACGA GCTGGCCACG GTGCTCGGGC ACGAGCTGTC GCACGTCACG
CAGCGCCACA TCTCGCGCAT CATGAACCAG CAGGGCAGGC AGATGCCGCT GATGCTGGCC
GGCCTGATCC TCGGCATGAT CGCGGCCAGC AAGAGCCGCA ACGCCGATGC GGGCCAGGCC
GTGATGATGG GCAGCCAGGC GCTGTTCATG CAGAACCAGC TGAGCTTCTC GCGCGACATG
GAGCGCGAGG CCGACCGCGT CGGCTTCGGC GTGATGACGC AGGCCGGCTT CGCGCCGCAG
GGCGCGGCGG CCATGTTCGA AAAGCTGCAG TACGCCTCGC GCCTGAACGA CAACGGCTCC
TACCCCTACC TGCGCAGCCA TCCGCTCACG TCGGAGCGCA TCTCGGACAT GCAGGGGCGC
TTCCAGTTCC GCCTCGATAC CGCCCCGGCC ATGCCGCTGG CCATGGACCA CGCCATGATC
GCCGCGCGCG CCCGCGTGCT CACGCGGCCG GGCGTCGACG TGCTGCGGCT GTGGGTCGAT
GCGGCCTCCA CCGGCGAATT CGCCAAGAGC AGCGCGGCCC AGCAGGCCGG CACGCTCTAC
GCGGCCGCGC TGTCGGCCAA GGAACTGCGC GACTTCCGCG CCGCGCGCAC CCTGGCCGAG
CGGCTGACCG CGCGCACCGC CGACGACGCC TCCGCCGCCA AACTGGCGCG CTGGCTCCAT
GCCGAGATCG AGCTGGCCGG CGGCAACGCG CCCAAGGCCG CAAGCCTGCT CGATGCGAAG
TCGAAGGAGC GGCCCGAGAT GCTGCTCGCG GCCGATGCCG CCGTGGCCAC GCGCCAGCCC
GCCCCCCTGG TGCCGGTGCT GCGCGACTGG GTGGCCACGA ATCCGCGCGA CGCCACGGCC
TGGCGGGCGC TGGCCAACCT GTATGGCGCG CAGAACGATT CGGTGCGCGC GGTGCGCGCC
GATGCCGAGG CCAACGTGGC CATCCTCGAC TATCCGGCCG CGCGCGACCG CCTCAAGGCC
GCGCAGGAGC TGATGCGCAA GCCCGGCGCG CCGGTGGACC ACTACGAGGC GTCGATCATC
GACACCCGCG CGCGGGCCGT GGAAGTATTG GTGAAGCGGC AGGCTGAGGA GCCGCCGCTG
AAGTGA
|
|---|
| Protein sequence | MPRLTPFATK KTSAAPALRS LCATVLIACQ VLLPVPARAQ MQVLPGLGDG GEMTASAERQ
LGDQIARELY RDTDYIDDPV IAAYVQDIWQ RLLAAARQRG ELTPELDERF AWTILLGRDR
NINAFALPGG YLGLNMGLIA TVGSRDELAT VLGHELSHVT QRHISRIMNQ QGRQMPLMLA
GLILGMIAAS KSRNADAGQA VMMGSQALFM QNQLSFSRDM EREADRVGFG VMTQAGFAPQ
GAAAMFEKLQ YASRLNDNGS YPYLRSHPLT SERISDMQGR FQFRLDTAPA MPLAMDHAMI
AARARVLTRP GVDVLRLWVD AASTGEFAKS SAAQQAGTLY AAALSAKELR DFRAARTLAE
RLTARTADDA SAAKLARWLH AEIELAGGNA PKAASLLDAK SKERPEMLLA ADAAVATRQP
APLVPVLRDW VATNPRDATA WRALANLYGA QNDSVRAVRA DAEANVAILD YPAARDRLKA
AQELMRKPGA PVDHYEASII DTRARAVEVL VKRQAEEPPL K
|
|---|
| |