| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5162 |
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| Symbol | |
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| ID | 7971533 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5483598 |
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| End bp | 5484065 |
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| Gene Length | 468 bp |
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| Protein Length | 155 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644795756 |
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| Product | alkylhydroperoxidase like protein, AhpD family |
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| Protein accession | YP_002947030 |
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| Protein GI | 239818120 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2128] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.434991 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCAGCA CCACCACCCC TCGCCTCGCC TGGTTCAAGA TCGCCCCCAA GGCCTTCCAG
GCCATGATCG CCGTCAACGG CGCCATCGAA TCGTCCAGCC TCGGCAAGGT GCTGATCGAC
GTCGTCTTTG CCCGCGTCTC GCAGATCAAC GGCTGCGCCT ACTGCCTCGA CATGCACGTG
CGCGACCTGC GCCAGCAGGG CGAGGACTGG CAGCGCATCA ACAGCCTGGC CACCTGGCGC
GAAGTGAGCT TCTTCAGCGA GCGCGAACGC GCGGCGCTGG ACTGGGCCGA AACGCTGACG
CGCCTGCCGG GCCACCACGA AGCCCGCGAC GCCGAGTTCG AAGCGCTCCA GGCGCATTTC
AGCGAACTCG AGATCGTCGA ACTCTCGATC GCGATTGCGC AGATCAACGC GTGGAACCGC
ATGGGTGTGG GCATGCGCCT GCCGGTGGCG GCCAAGGCGA TGCCCTGA
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| Protein sequence | MSSTTTPRLA WFKIAPKAFQ AMIAVNGAIE SSSLGKVLID VVFARVSQIN GCAYCLDMHV
RDLRQQGEDW QRINSLATWR EVSFFSERER AALDWAETLT RLPGHHEARD AEFEALQAHF
SELEIVELSI AIAQINAWNR MGVGMRLPVA AKAMP
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