| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5145 |
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| Symbol | |
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| ID | 7971516 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5459056 |
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| End bp | 5460084 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644795739 |
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| Product | NAD-dependent epimerase/dehydratase |
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| Protein accession | YP_002947013 |
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| Protein GI | 239818103 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.765579 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACATTC TCATCACCGG AGGCTGCGGT TTCGTCGGCG CGCGGCTCGC GCGCACGCTG
CTCGCGGGCG GCCCGCTGGC ACTGGCGGGC GGCGCGGCCC GGCCTGTCTC GCGCATCACG
CTGGCCGACC GCGTGGCGCC GCCCGCCGAC CTCGCGGCCG ACGCGCGCGT GCAGTTCGTG
CAGGGCGACC TGTACGAGCA GGCCACCGGC GGCGCGCTGC CGCTGGCCGA CACGCACGCC
GTGTTCCACC TGGCCGCGGC CGTGAGCGGC GAATGCGAGG CCGACTTCGA CCTGGGCATG
CGCAGCAACC TCGACACCAC GCGCGCGCTG CTCGACGCCT GCCGCCGCGC GGGCCATGCG
CCGGTGTTCG TGTTCTCCAG CTCGGTCGCG GTGTTCGGCG ATTCGCCCGA GCAGCGGCTG
CCCGCGGTGA TCGAGGACAC CACCTTGCCG ACGCCGCAGA ACAGCTACGG CATCCAGAAG
TTCGTCGGCG AGCAGCTGGT GGCCGACTTC ACGCGCAAGG GTTTCGTGCA GGGCCGCAAC
GTGCGGCTCA TGACGGTCTC GGTGCGGCCG GGCCGGCCCA ACGGCGCGGC CTCCAGCTTC
CTGAGCGGCA TGCTGCGCGA GCCGCTGGCG GGCGAACGCG CGCGCTGCCC CGTGGCGCCA
GAAACGGCAG TCGCGCTCGC ATCGCCCGGC AACACCGTCG CGGGCATCGT GCGCGCGGCC
ACGGCCAGCG CCGCCGAATG GGGCGCACGC ACCGCCGTCA ACCTGCCCGC GCTGACCACC
ACCGTGCGCG AGATGGCCGA TGCGCTCGAA CGCATCGCCG GCAAGGAAGC CACCGGGCTG
ATCGACTGGG AACCCGATGC GGCCATCGCG AAGATCGTGA CCAGCTGGCC CAGCCGCATC
CACGCCGCGC GCGCCGAGGC GCTGGGCCTC GCGGCCGACG CGAGCTTCGA CGCCATCCTG
CGCGACTACG TGCGCGAGAA CCCGCAGGCG GTGAAGCTGC CTGTACGGCC TGCTGCCACC
AAGGACTGA
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| Protein sequence | MNILITGGCG FVGARLARTL LAGGPLALAG GAARPVSRIT LADRVAPPAD LAADARVQFV
QGDLYEQATG GALPLADTHA VFHLAAAVSG ECEADFDLGM RSNLDTTRAL LDACRRAGHA
PVFVFSSSVA VFGDSPEQRL PAVIEDTTLP TPQNSYGIQK FVGEQLVADF TRKGFVQGRN
VRLMTVSVRP GRPNGAASSF LSGMLREPLA GERARCPVAP ETAVALASPG NTVAGIVRAA
TASAAEWGAR TAVNLPALTT TVREMADALE RIAGKEATGL IDWEPDAAIA KIVTSWPSRI
HAARAEALGL AADASFDAIL RDYVRENPQA VKLPVRPAAT KD
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