| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5129 |
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| Symbol | |
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| ID | 7971500 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5442953 |
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| End bp | 5444725 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644795723 |
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| Product | cytochrome c oxidase, subunit I |
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| Protein accession | YP_002946997 |
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| Protein GI | 239818087 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
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| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.828431 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTCGT CCCACGCCGA CGGCGGCGAC CACCCCGCGC CGCAGAGCTT CCTGACCCGC
TACGTCTGGA GCCAGGACCA CAAGGTGATC GCCGTGCAGT ACGCCTGCAC CGCCATCGCA
GTGGGCGTGG TGGGCGTGGT GCTGTCCAAC CTGATGCGGC TGCAGCTCGG CTTTCCGGGC
CAGTTCGAGT TCATCAACGC CGAGCGCTAC TACCAGTTCG TGACCATGCA CGGGATGATC
ATGGTGATCT ACCTGCTCAC GGCGCTGTTC CTCGGCGGCT TCGGCAACTA CCTGATCCCG
CTGATGGTGG GCGCGCGAGA CATGGTCTTT CCCTATCTCA ACATGCTGAG CTTCTGGGTC
TACCTGCTGT CGGTGGCGGT GCTGATGGCG AGCTTCTTCG TCGCGGGCGG ACCCACCGGC
GCGGGCTGGA CGCTGTATCC GCCGCAGTCG ATCCTGCCCG GCACGCCGGG CCATGCGGGC
GGCATCGTGC TGATGCTGGT GTCGCTGCTC ATCTTCATCG TGGCAACGAC GATGGGCGGC
CTCAACTACG TGACCACCGT GCTGCAGGCG CGCTGCGAAG GCATGACGCT GCTGCGCATG
CCGCTCACGG TGTGGGGCAT CTTCGTGGCC ACCATCCTCG CGCTGCTCGG TTTTCCGGCG
CTGTTCGTCA GCGGCGTGAT GCTGCTGCTC GACCGGACGC TGGGCACCAG CTTCTTCATG
CCGGCGCTGG TGTCGATGGG CCAGGTGACC GGCTACAAGG GCGGCAGCCC GCTGCTGTTC
CAGCACCTGT TCTGGTTCTT CGGCCATCCC GAGGTCTACA TCGTCGCGCT GCCGGCCTTC
GGCATCGTCT CGGACCTGAT CAGCGTGCAT GCGCGCAAGT GCATCTTCGG CTACCGCATG
ATGGTGTGGG CCATCGTGGC CATCGGCGCG CTCAGCGTGG TGGTGTGGGC GCACCACATG
TTCGTGAGCG GCATGAACCC GTACTTCGGC TTCTTCTTCG CAACCACCAC GCTGATCATC
GCGGTGCCCA CCGCGATCAA GGTCTACAAC TGGATCCTGA CGCTGTGGCG CGGCGACATC
CACCTGACGG TGCCGATGCT GTTCGCGCTG GCCTTCCTGT GCACTTTCCT CATCGGCGGG
CTCACGGGCC TGTTCCTCGG CAACGTGAGC GTGGACATTC CGCTGTCGGG CACGTATTTC
GTGGTGGCGC ACTTCCACAT GGTGATGGGC GTGGCGCCGC TCCTGGTGGT GTTCGGCGGC
ATCTATCACT GGTTCCCCAA GGTCACCGGC CGCATGCTCG ACGACCGGCT CGGGCGCCTG
CATTTCTGGA TCACCTTCCT CGGCACCTAC CTGATCTATT TTCCGATGCA CTACCTGGGT
GTGCTGGGCA TGCCGCGGCG CTACTACAAC TTCGACGGCT ATGCGTTCAT TCCGCCCTCG
GCGTTCAGCC TGAACACCTT CATCACCGTG GTTGCGCTGA TCGTCGGCGT GGCGCAGCTG
CTGTTCATTG CCAATCTTGC CTGGAGCGCG TGGCGCGGCC GGCCGGCCGA CGCCAATCCA
TGGCGCGCGG CCTCGCTCGA ATGGCAGACG CCCGCCACGC CGCCGGGCCA CGGCAACTGG
GGACCGCGGC TGCCGGTGGT CTACCGGTGG GCCTATGCCT ATGGGGAGCC GGGTGCGGCG
GAGGATTTCA TCGCGCAGAA CGCGCCGCCG GAAGCCGGGC CCGGGGAGCC CGAGCCGGAG
GGCCAGGGAG AGGTCCGGGG AGCACCGGCA TGA
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| Protein sequence | MNSSHADGGD HPAPQSFLTR YVWSQDHKVI AVQYACTAIA VGVVGVVLSN LMRLQLGFPG
QFEFINAERY YQFVTMHGMI MVIYLLTALF LGGFGNYLIP LMVGARDMVF PYLNMLSFWV
YLLSVAVLMA SFFVAGGPTG AGWTLYPPQS ILPGTPGHAG GIVLMLVSLL IFIVATTMGG
LNYVTTVLQA RCEGMTLLRM PLTVWGIFVA TILALLGFPA LFVSGVMLLL DRTLGTSFFM
PALVSMGQVT GYKGGSPLLF QHLFWFFGHP EVYIVALPAF GIVSDLISVH ARKCIFGYRM
MVWAIVAIGA LSVVVWAHHM FVSGMNPYFG FFFATTTLII AVPTAIKVYN WILTLWRGDI
HLTVPMLFAL AFLCTFLIGG LTGLFLGNVS VDIPLSGTYF VVAHFHMVMG VAPLLVVFGG
IYHWFPKVTG RMLDDRLGRL HFWITFLGTY LIYFPMHYLG VLGMPRRYYN FDGYAFIPPS
AFSLNTFITV VALIVGVAQL LFIANLAWSA WRGRPADANP WRAASLEWQT PATPPGHGNW
GPRLPVVYRW AYAYGEPGAA EDFIAQNAPP EAGPGEPEPE GQGEVRGAPA
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