Gene Vapar_5128 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5128 
Symbol 
ID7971499 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp5442327 
End bp5442956 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content72% 
IMG OID644795722 
Productcytochrome oxidase subunit III oxidase polypeptide I 
Protein accessionYP_002946996 
Protein GI239818086 
COG category[C] Energy production and conversion 
COG ID[COG1845] Heme/copper-type cytochrome/quinol oxidase, subunit 3 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTTCAG GAGCCGCCTT GGGCATCCGC GGTGCCGGCC GCGGCCCTGG CCGCGCCCGC 
GATCCGCATG CGAGCGCGGC CGGCATCGGC CTGTGGGTCT TCATGGGCGT GGTGACTGCG 
TTGTTCTCCC TCTTCATCGT GGCCTATGTG ATGCGCATGA GCGGCGGCGA TGCGATGACC 
ATCGCGCTGC CGTGGCAGCT CTGGCTCAGC ACGGCATTGC TGGTGGCGGG CAGCGTGGCG 
CTGCAACGGG CCAGCGGCGC ACCGCGCGGT CCCGGCCCGA TGCGGGCGCG TCGCCTGCTG 
CTGGCGGGGG GTCTCTTCGC ATTCGGCTTC CTGGCCGTGC AGCTGTGGGC CTGGCAGGCG 
CTGCTGGGCG CGCAGGTGAT GCCGGCCGGC AATCCGGCGG GCAGCTTCTT CTACCTGCTG 
ACGGCCATGC ATGGGCTCCA CCTGATGGGC GGGCTGGTCG GGTGGGCCTG GACGGCGCAC 
GCCGCGTGGC CCGATCCGGC CCGCTCCGCC TGGCGCATCG CGCTGTGCGC GCGCTACTGG 
CACTTCATGC TGGCGGTGTG GCTGGTGCTG TTCGCGCTGC TGGGCTGGGT GACGCCGGAG 
GTGGCGCGCT TCATCTGCGG CACATCCTGA
 
Protein sequence
MISGAALGIR GAGRGPGRAR DPHASAAGIG LWVFMGVVTA LFSLFIVAYV MRMSGGDAMT 
IALPWQLWLS TALLVAGSVA LQRASGAPRG PGPMRARRLL LAGGLFAFGF LAVQLWAWQA 
LLGAQVMPAG NPAGSFFYLL TAMHGLHLMG GLVGWAWTAH AAWPDPARSA WRIALCARYW 
HFMLAVWLVL FALLGWVTPE VARFICGTS