Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5102 |
Symbol | |
ID | 7971473 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 5414836 |
End bp | 5415744 |
Gene Length | 909 bp |
Protein Length | 302 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644795696 |
Product | transcriptional regulator, LysR family |
Protein accession | YP_002946970 |
Protein GI | 239818060 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.65094 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCTGA CCCTGCGCCA ATTGCGCGCC TTCGCTGCCG TGGCCGAGAC CGGCAGCTTC ACCGCGGCCG CGCAGCAGCT GCACCTCACG CAGTCGGCGC TCAGCGTGCT GGTGCGCGAG CTCGAGCGCG AGATGGGCGT GCAGCTGCTC GACCGCCACA CGCGGCGCGT GCAGTTGTCC GAGGCCGGGC GCGAGTTCCT GCCCTCGGTG CACCGGCTGC TGGGCGACCT CGCGGGCGCG GTAGCCGGCG TCACGGATTT GCGTGACAAG AAGAAAGGGC TGTTGCGGCT TGCAGCGCCG CAGCTCATGG CCTGCACGCT GATGCCGCGC GTGATCGCGC TCTACCGCGA GGCGTTCCCC GACGTCGATG TGCGCCTGGC CGACACGCTG CCCGAGCACC TGCTGGCGGG CGTGACGGCC GGTGACGTGG AGCTTGCGGT GGGGCAGGAC GTGGCGGTCG ACGGCGCCGT CGAGCGCCGC ACGCTGTTCC GCGACCGCCA CTGGCTGATC TGCCCGCCCG GCCACGCCTT TGCGAAGCGC CGCAAGGTGC GCTGGCATGA ACTCGGCCCC TACACCTTCA TCGCGCCCAC GCGCGACTTC CGCCAGCGCG TGCTGCCCGA GCTCGCGCCG GCCGAGCGCG AGCTCATGCT GCGCCCGGGC ACCCAGGAGG TGTCGTACAT GACCACCGCG CTCGGCATGG TGGCCTCGGG GCTCGGGCTC ACGGTGTGCC CGACCTATTC GGCGCCGCTG GTGCGCGCCC ACGGCCTGCA GATGGTGCGG CTCGAATCGC CCGACTTCCA CCGCGAGGTC TGCATCTACA GCGCGGCGCG GCGCACCCTG TCGCCGGCTG CCGCGAGCTT TGTCGAGATC CTCGAGCGCC ATGCCCGGAC GCAGCCCAAG GCCGGATGA
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Protein sequence | MNLTLRQLRA FAAVAETGSF TAAAQQLHLT QSALSVLVRE LEREMGVQLL DRHTRRVQLS EAGREFLPSV HRLLGDLAGA VAGVTDLRDK KKGLLRLAAP QLMACTLMPR VIALYREAFP DVDVRLADTL PEHLLAGVTA GDVELAVGQD VAVDGAVERR TLFRDRHWLI CPPGHAFAKR RKVRWHELGP YTFIAPTRDF RQRVLPELAP AERELMLRPG TQEVSYMTTA LGMVASGLGL TVCPTYSAPL VRAHGLQMVR LESPDFHREV CIYSAARRTL SPAAASFVEI LERHARTQPK AG
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