Gene Vapar_5078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5078 
Symbol 
ID7974197 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp5390855 
End bp5391361 
Gene Length507 bp 
Protein Length168 aa 
Translation table11 
GC content69% 
IMG OID644795672 
ProductYiaAB two helix domain protein 
Protein accessionYP_002946946 
Protein GI239818036 
COG category[S] Function unknown 
COG ID[COG4298] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAACCT TCCCTTCCAC CACCGTTTCG ATCCAGCGCG ACACGCGGGC CTGGCAGTTC 
CAGGTCTGGG CTTCGTTCGC GGCCGCCGTG TTCCTGTGCG CCACCGGCCT GAGCTGGCTG
CCGGGCGAGG CGCTGGACCG TGCGTTCATG GTGATGGGCT ATGTGTTCTG CCTGAGCACC
GCCTTCATGC TGGCCAAGTT CGTGCGCGAC AGCCAGCAGG CAGGCGCCGG CGGCACGGCA
GCGAGCCGCG ACGTGCCGAT GTGGCGCCTG GTGGTCTGGG GCAGCTTCTT CACCGCGATG
GGCCTGACCG GCTGGGGCCT GGTCCGCATG GAGATCAACG ACGCCTACAA GGCCTTCCTC
GGTGTGAGCT GGCTGTTCCT GATCAGCTCG GCCTTCACGC TGGCCAAGAC GCTGCGCGAC
CGCCACGAAG CCGACCTGAT CGAGGCGCGC CTGCAGGGCC GCCGCGCCGC CCGCCAGGAA
GCCGCTGCCG CCGGCTCGGC CGAATGA
 
Protein sequence
MQTFPSTTVS IQRDTRAWQF QVWASFAAAV FLCATGLSWL PGEALDRAFM VMGYVFCLST 
AFMLAKFVRD SQQAGAGGTA ASRDVPMWRL VVWGSFFTAM GLTGWGLVRM EINDAYKAFL
GVSWLFLISS AFTLAKTLRD RHEADLIEAR LQGRRAARQE AAAAGSAE