| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5023 |
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| Symbol | |
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| ID | 7974141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5341826 |
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| End bp | 5343016 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795616 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_002946891 |
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| Protein GI | 239817981 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4214] ABC-type xylose transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAATC CAACGCCAGG CTGGTGGCGG CGCACGGGCG TCGACCTGCG GCTCCTGCTG
ATGAGCGTGC TGCTGATCGC CATGGGGGTG GTCTTCAACG TGATGTCGGG CGGCGTGTTC
CTGTCGCCCG AGAACCTCTA CAACGTGGCG CAGCAGACGG CGGTGGTGGG CATCGTGTCG
ACGGTGATGG TGCTGGTGAT CGTGGCGCGC CACATCGACC TGTCGGTCGG CTCGGTCATG
GGCTTCGTGG GCGTGCTGAT CGCGTACCTG CAATACACCT CGGGCTGGTC GTGGCCCGCG
GCCTGCCTCG CGGGGCTCGC GGTGGCGCTG CTGGTGTCGA TCTACCAGGG CTGGCTCACG
GCGATGCTGG GCGTGCCCTC GTTCGTGGTC ACGCTCGGCG GGCTGATGTC GTTCCGCGGC
GCGGCCTTCC TGGTGGCCGA CGGCAAGACG CAGCCCGTGA ACGACGAGTT CTTCCAGCGC
CTGGGCGGCG GCTACGACGG CGGCATCGGC ACCACCATGA CCTGGGTGCT CGCGGCCTTC
GTGGCGCTGG TGCTGTTCGC GCGCATGCTG CAGAAGCGCC GCGCACGCGC GCACCACGGG
ATGCCCAACG AGCCGCTGTG GCTGGAGCTG CTGCTGACGG CGGTGCCGGC GGCCGTGGTG
TTCGTCTTCG CGGCGGTCAT GAACAACTAC CAGATCGCCT CGAAGGACGC GCCGCAGGGC
CTGCCGATCC CGGTGCTGAT CTGGGCCGTG GTGGCGATCG TGCTGTCGTT CATCGTGCAC
CGCACGCGCT TCGGCCGCTA TGTGTTCGCG ATGGGCGGCA ACCCCGATGC GGCGGCGCTG
GTGGGCATTC CGGTCAAGCG CGTCACGCTG ATGCTGTTCG CGCTGCTCGC GGTGCTGGTG
ACGGTGGCGG CCATCGTGTC GATCGCGCGG CTCAACGCCG GCACCAACTC GCTCGGCACG
GGCATGGAGC TGTACGTGAT CGCGGCGGCC GTGATCGGCG GCACGGCGCT CGCGGGCGGC
ACCGGCTCGA TCTTCGGCTC GGTGCTGGGC GCGCTGATCA TGCAGTCGCT CGACAGCGGC
ATGCTGCTGC TCGACGTGCC GATCGGCAAG CGCATGGTGA TCATCGGGCA GGTGCTGATC
GTGGCGGTGG TGTTCGATGT GCTGTACCGG CGCAAGTTCG GGGAGAACTA G
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| Protein sequence | MSNPTPGWWR RTGVDLRLLL MSVLLIAMGV VFNVMSGGVF LSPENLYNVA QQTAVVGIVS
TVMVLVIVAR HIDLSVGSVM GFVGVLIAYL QYTSGWSWPA ACLAGLAVAL LVSIYQGWLT
AMLGVPSFVV TLGGLMSFRG AAFLVADGKT QPVNDEFFQR LGGGYDGGIG TTMTWVLAAF
VALVLFARML QKRRARAHHG MPNEPLWLEL LLTAVPAAVV FVFAAVMNNY QIASKDAPQG
LPIPVLIWAV VAIVLSFIVH RTRFGRYVFA MGGNPDAAAL VGIPVKRVTL MLFALLAVLV
TVAAIVSIAR LNAGTNSLGT GMELYVIAAA VIGGTALAGG TGSIFGSVLG ALIMQSLDSG
MLLLDVPIGK RMVIIGQVLI VAVVFDVLYR RKFGEN
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