Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5006 |
Symbol | |
ID | 7974124 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 5318449 |
End bp | 5320404 |
Gene Length | 1956 bp |
Protein Length | 651 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644795600 |
Product | AMP-dependent synthetase and ligase |
Protein accession | YP_002946875 |
Protein GI | 239817965 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.604122 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCAAACCA CCGCCCCCAC CTTTCCCCGT CTGCTGCTTG CGCATGCGCA AGCCCAGCCC CAGGCGCCCG CCATCCGCGA GAAGGATCTC GGCATCTGGC AAACCTGGAG CTGGAGCGCC GTGGCGCAGG AAGTGCGCGA AATGGCCTGC GGCCTCGCGA GCCTGGGCTT CAAGCCCTTC GACAACCTGT CCATCGTGGG CGCCAACCGC CCGCACCTGT ACATGGCGGT GCTCGCAGCG CAGAGCCTGC GCGGCGTGCC GGTGCCGCTC TACCAGGACG CGGTGGCCAG CGAGATGGTC TTCATGCTGC AGGACGCGGC CATCGACTTC GTGATCGTGG AGGACCAGGA ACAGGTCGAC AAGCTGCTCG AGTGCCGCGA GCTGCAGAAG GACCAGCAGC ACGGCATCCG CCACATCATC TACGACGACC CCAAGGGCCT GCGCCACTAC GACCAGCCCG GGCTCATGAG CTACGAGCAG CTGCGCGAAC TGGGCCGCGA ATTCGACAAG GCCCACGTCG GCTACTACGA CCGCGCGGTG GCCAGCGGCG AAGCCACCGA CGTCGGCGTG ATCCTCTACA CCTCGGGCAC CACCGGCCGG CCCAAGGGCG TGTGCCAGAC GCATGCGAGC TTCATCGCGG CGGGCCGCGG CGGCGTCGAG ACCGACAGGC TCGGCCCCGG CGACAACATC ATGAGCTACC TGCCGATGGC CTGGGTCGGC GACCACCTGT TCTCGGTGGC GCAGTGGCTG GTGGGCGGCT TCACGCTCAA TTGCCCCGAG TCGTCCGAGA CGGTGATGAA CGACATGCGC GAGATCGGCC CGAGCTACTA CTTCGGCCCG CCGCGCACCT TCGAGGGCCT GCTCACGGCC GTGTCGATCC GCATGGAAGA CGCGGCCGCG CCCAAGCGCT GGCTGTACGG CAAGTTCATG GCGCTCGCGC AGCGCGTGGG CGCCGACATC CTCAATGGCG CGCCGGTGGG CACGGGCGAC CGGCTGATGT ACGGCCTTGG CAACCTGCTG GTCTACGGGC CGCTGCGCAA CGTGCTGGGC ATGAGCCGCA TCCGCGTGGC CTACACGGCC GGCGCGGCCA TCGGGCCGGA CCTGTTCCGC TTCTACCGCT CGATCGGCGT CAACCTCAAG CAGTTCTACG GCCAGACCGA GACCTGCGCG TACGTGTGCC TGCAGCAGGA CGGCAAGGTC AAGCTGCAGA CCGTGGGCAC GGCCGCGCCG GGCATCGAAC TGAAGATCGC CGAGGACGGC GAAGTGCTGG TGCGCGGCGT CTCGGTGCTC AAGGAATACT ACAAGCGCCC CGACGCCACG GCCGAGGTGC TCGACGCCAA CGGCTACTTC CACACCGGCG ACGCGGGCGT GCTCGACAGC GAGGGCCACC TGCGCATCAT CGACCGCGCC AAGGACGTGG GCCGGCTCGC GAGCGGCGCG ATCTTTGCGC CCAACTACAT CGAGAACAAG CTCAAGTTCT TCCCGCAGAT CAAGGAAGCC GTGTGCTTCG GCAACGCACG CGAGGAGGTC TGCGCGGCCA TCAACATCGA CTTCGAGGCG GTGGGCAACT GGGCCGAGCG CCGGGGGCTG GCCTATGGCG GCTACGTCGA CCTGGCCGGC AAGCCCGAGG TGCTGGCGCT CGTCGCCGAA TGCATCGCCA AGGTGAATGC CGACCTGGCG AGCGAAGACG GCATGGGCGA GACGCAGATC GCGCGCTTCC TGGTGCTGCA CAAGGAGCTC GACCCCGATG ACGACGAGCT CACGCGCACG CGCAAGGTGC GGCGCGGCTT CATCGCCGAG AAATACGCGG TGCTGGTCAG CGCGCTGTAC GGCGGCAAGA GCGAGCAGTT CATCGAGACC CAGGTCAAGT TCGAGGACGG ACGCACGGGG GTTGTCAGCG CCACGCTGAA GATCACCGAA GCCAAGACCT TCCCCATCGT GAAGGCCGCT GCATGA
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Protein sequence | MQTTAPTFPR LLLAHAQAQP QAPAIREKDL GIWQTWSWSA VAQEVREMAC GLASLGFKPF DNLSIVGANR PHLYMAVLAA QSLRGVPVPL YQDAVASEMV FMLQDAAIDF VIVEDQEQVD KLLECRELQK DQQHGIRHII YDDPKGLRHY DQPGLMSYEQ LRELGREFDK AHVGYYDRAV ASGEATDVGV ILYTSGTTGR PKGVCQTHAS FIAAGRGGVE TDRLGPGDNI MSYLPMAWVG DHLFSVAQWL VGGFTLNCPE SSETVMNDMR EIGPSYYFGP PRTFEGLLTA VSIRMEDAAA PKRWLYGKFM ALAQRVGADI LNGAPVGTGD RLMYGLGNLL VYGPLRNVLG MSRIRVAYTA GAAIGPDLFR FYRSIGVNLK QFYGQTETCA YVCLQQDGKV KLQTVGTAAP GIELKIAEDG EVLVRGVSVL KEYYKRPDAT AEVLDANGYF HTGDAGVLDS EGHLRIIDRA KDVGRLASGA IFAPNYIENK LKFFPQIKEA VCFGNAREEV CAAINIDFEA VGNWAERRGL AYGGYVDLAG KPEVLALVAE CIAKVNADLA SEDGMGETQI ARFLVLHKEL DPDDDELTRT RKVRRGFIAE KYAVLVSALY GGKSEQFIET QVKFEDGRTG VVSATLKITE AKTFPIVKAA A
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