Gene Vapar_4936 details

Gene Information

• Locus tag: Vapar_4936
• ID: 7974218
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 5243192
• End bp: 5245072
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 644795531
• Product: AMP-dependent synthetase and ligase
• Protein accession: YP_002946806
• Protein GI: 239817896
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG1022] Long-chain acyl-CoA synthetases (AMP-forming)

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.457065
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCACAA CCGCCCTGCG CGCTCCAGCA GGCCTCTGGG ACCTCGCGCA CCTGCAGCCG 
AGCCCGGGCA TCGCCGTGCC GGGCGACACC ATCCCGGCCG TGTTCTGGAA GGCCGTGGAG 
CTGCGCGCCG ACAAGATCTG GATGCGGCAG AAGGAATTCG GCATCTGGCG CGCCTGGACC 
TGGCGGCAAA CCGCCGAGGC CGTGCGCGAG ATTGCGGGCG GCCTGCTGGC GCTCGGCTTC 
GGGCCGGGCG AGTGCGCGTC GATCCTCGCC AACACCGTCA TCGAATGGGT GCTGTGCGAC 
GTGGCCGTGC TCAGCTGCGG CGGCGTGTCC AACGGCATCT ATCCCACCGA CGCGGCCTCG 
CAGGTGCACT ACCTCTGCGA GGATTCGCGC ACCACCTTGC TCTTCGTGGA GGACGACGAG 
CAGCTCGACA AGGCGCTCGA GGTGCGCGCG CAATTGCCGA TGCTGCGCAA GATCGTCGTG 
TTCGACATGG AAGGCCTGCG CGAACTCGAC GACCCCGGCG TCATCAGCCT GGACGCCCTG 
CGCGCACTCG GCCGCGACCA CCTGCAGGCC CATCCGCAGG CGCTGGACGA GCGCATTGCC 
GCCTGCCGCC CCGAAGATCT CGCGATCCTG GTCTACACCT CGGGCACCAC CGGCAAGCCC 
AAGGGCGCGA TGCACAGCCA CCGCGGGCTG GTCTACACCA TGCGCGGCTA CAACACCCTG 
CTGGCCCAGG GCGAGGGCGA CGAGCGCATG TGCTTCCTGC CGCTGTGCCA CATTGCCGAG 
CGCATGGGCG GCGAATACTT CGCGATGTAC ACCGGCTCGA TCCTCAACTT CGTCGAGAAC 
CCGGAGACGG TGCCCGAGAA CGTGCGCGAG ATTTCGCCCA CGGTGTTCAC CGCCGTGCCG 
CGCGTGTGGG AGAAGTTCTA TTCGGGCGTG ATGATCGCGC TCAAGGAAGC CAGCCGCCTG 
CAGCAGGCTG CGTACGGCTG GAGCATCGGC GTGGGCCGGC AGATCGCCGA GCGCGTGCTC 
GAGGGCCGGC CGGTGGGCGC GTGGCTGCGC TTGAAGTTCC GCCTGGCGCG CTGGCTGGCG 
CTGGACAACG TGCGCAAGCT CATCGGCATC CACCGCGCGC GTTTTCTCGT GACCGGCGCG 
GCGCCGATCT CGCCCGAGCT CGTGCGCTGG TACCTGGCGC TGGGCGTGCC CATGCTGGAG 
GTCTGGGGCA TGACGGAATC GTGCGGCGCC TCCACCGGCG TGCCGCCGTC GCGCATCCGG 
CCGGGCTCGA TCGGCCCGGC CACCAGCTAC AACGAGGTGC GCCTCGATCC GCAGACCGGC 
GAGATCCTGG TGCGCGGCCC CAATGTCTTC ATGGGGTACC TCAACCTGCC CGAGAAGACC 
GCCGAGACCA TCGACGCCGA CGGCTGGCTG CACACCGGTG ACGTGGGAAC GGCCGACGCG 
GAAGGGTATT TCCGCATCAC CGACCGCATG AAGGACATCA TCATCACGGC AGGGGGGAAG 
AACATCACGC CGAGCGAGCT GGAGAACGAG CTCAAGTTCA GCCCCTACAT CACCGACGCA 
GTGGTGATCG GCGACAAGAA ACCCTACCTC ACGGTGATCG TCATGATCGA CCAGGAGAAC 
GTCGAGAAAT TTGCGCAGGA CCACGACGTG CCGTTCAGCA ACTACGAAAG CCTGACGCGC 
GCGCAGGAGG TGCTGGACCT GATCCAGGGC GAGATCGACC GCGTCAACGC GAAGTTTGCG 
CGGGTCGAGC AGATCAAGAA GTTCTTCCTG CTCGAAACGC AGCTCTCCGC CGAGGACGAG 
GAGCTCACGC CGACGATGAA GCTCAAGCGC AAGCTGGTCC AGGCCAAGTA CGCCGAGCGC 
ATCGAGGCCA TGTACCGCTG A 

 

Protein sequence

MSTTALRAPA GLWDLAHLQP SPGIAVPGDT IPAVFWKAVE LRADKIWMRQ KEFGIWRAWT 
WRQTAEAVRE IAGGLLALGF GPGECASILA NTVIEWVLCD VAVLSCGGVS NGIYPTDAAS 
QVHYLCEDSR TTLLFVEDDE QLDKALEVRA QLPMLRKIVV FDMEGLRELD DPGVISLDAL 
RALGRDHLQA HPQALDERIA ACRPEDLAIL VYTSGTTGKP KGAMHSHRGL VYTMRGYNTL 
LAQGEGDERM CFLPLCHIAE RMGGEYFAMY TGSILNFVEN PETVPENVRE ISPTVFTAVP 
RVWEKFYSGV MIALKEASRL QQAAYGWSIG VGRQIAERVL EGRPVGAWLR LKFRLARWLA 
LDNVRKLIGI HRARFLVTGA APISPELVRW YLALGVPMLE VWGMTESCGA STGVPPSRIR 
PGSIGPATSY NEVRLDPQTG EILVRGPNVF MGYLNLPEKT AETIDADGWL HTGDVGTADA 
EGYFRITDRM KDIIITAGGK NITPSELENE LKFSPYITDA VVIGDKKPYL TVIVMIDQEN 
VEKFAQDHDV PFSNYESLTR AQEVLDLIQG EIDRVNAKFA RVEQIKKFFL LETQLSAEDE 
ELTPTMKLKR KLVQAKYAER IEAMYR