| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4884 |
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| Symbol | |
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| ID | 7971578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5201489 |
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| End bp | 5203021 |
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| Gene Length | 1533 bp |
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| Protein Length | 510 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795479 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_002946754 |
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| Protein GI | 239817844 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGCGCG GCTTCGGCGC CATCGCCGAC CTGGTTCGCC TCCACGCGCA ACACACGCCC
GGCCACGCCG CGCTCGCGGA CGCGCAACAG GCGCTGGACT ACAGCGCGCT CGACGCGCTG
ATGGACCGCG TCGCGGCCGC CCTGCAGCGC GACGGCCTCG GGCCGGGCGA TGCCATCGCG
GTCTGCGCGG CGTCCTCGGT GAACTATGCG GCGGTGTTCC TCGGCGCCTT GCGCGCGGGC
GTCGCGGTCG CGCCGCTGGC GCCCGGCTCC ACGCCGGCCA GCCTGGCTCG CATGATCGAG
GATGCCGATG CGCGCGTTCT CTTCACCGAT GCCTCGGCGG CCGAGGTGGT CGGCCCTGCG
AAGGAAGGCG GCATCCCGCG CGTGGCGCTC GACGGCTCCG CCGCGGGGCA GGCCCTCGAG
GGCTGGCTGG CCCCCGCGGG CACGCAGCCG CGCGCCGTCG AGACGCAGCC TTCCTGGCCC
TTCAACATCA TCTATTCGTC GGGCACCACC GGCGAGCCCA AGGGCATCGT GCAGGGCCAC
GGCATGCGCT GGGCCCATGT GCAGCGCGGC GCCAGGTACG GCTACGGCCC CGACACCGTC
ACGCTGCTGT CGACGCCGCT CTATTCGAAC ACCACGCTGG TGGTGTTCTT TCCGACCATC
GCCTTCGGCG GCTGCGTGGT GCTGATGCCC AAGTTCGACG CGCTCGGTTA TTTGCAGCTG
GCCGCGCAGC GCCGCGTGAC GCACACGATG CTGGTGCCGG TGCAGTACCA GCGCCTGATG
GCGCATCCGC GCTTCGATGC GCACGACCTC TCGTCCTTCC GCTTCAAGTT CAGCACCAGC
GCGCCCTTCA ACGCCGCGCT CAAGGCCGAC GTGCTGGGGC GCTGGCCCGG CGGGCTGATC
GAGTTCTACG GCATGACCGA AGGCGGCGGC ACCTGCATCC TCGAAGCCCA TCTGCACCCG
GACAAGCTGC ACACCGTCGG CCAGCCGGCC GAAGGCAGCG ACATCCGCCT GATCGACGAG
GAGGGCCGCG AAATCCCGCG TGCCAACATC GAACTGGCCG GCGAGGTGGT GGGCCATTCG
GGCGGCATGA TGACCGGCTA CCACCGCCAG CCCGAGAAGA CGCGCGAAGC GGAATGGTTC
GACGCCGCCG GCAAGCGCTT CATCCGCACA GGCGACATCG GCCGCTTCGA CGCCGAGGGC
TTCCTCACGC TGTTCGACCG CAAGAAGGAC ATGATCATCA GCGGCGGCTT CAACATCTAT
CCGAGCGATC TCGAAGCCGT GCTGCGCGGC CATGCCGCCG TGGCCGACGT GGCGGTGGCC
GGCGTGCCGT CGGAGCAATG GGGCGAGACG CCGGTGGCCT TCGTGGTGCG CCGCGAGGGT
GACGGCACGT CCGAGGACGC GCTGCTGCAA TGGGCCAACG CGCAGCTCGG CAAGACGCAG
CGCCTGGCGC GGCTGCAGTT CATTGACGAG TTGCCGCGCA GCGCGATCGG CAAGGTGCTC
AAGCGCGAAC TGCGTGAACT CGCCGGCCGC TGA
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| Protein sequence | MERGFGAIAD LVRLHAQHTP GHAALADAQQ ALDYSALDAL MDRVAAALQR DGLGPGDAIA
VCAASSVNYA AVFLGALRAG VAVAPLAPGS TPASLARMIE DADARVLFTD ASAAEVVGPA
KEGGIPRVAL DGSAAGQALE GWLAPAGTQP RAVETQPSWP FNIIYSSGTT GEPKGIVQGH
GMRWAHVQRG ARYGYGPDTV TLLSTPLYSN TTLVVFFPTI AFGGCVVLMP KFDALGYLQL
AAQRRVTHTM LVPVQYQRLM AHPRFDAHDL SSFRFKFSTS APFNAALKAD VLGRWPGGLI
EFYGMTEGGG TCILEAHLHP DKLHTVGQPA EGSDIRLIDE EGREIPRANI ELAGEVVGHS
GGMMTGYHRQ PEKTREAEWF DAAGKRFIRT GDIGRFDAEG FLTLFDRKKD MIISGGFNIY
PSDLEAVLRG HAAVADVAVA GVPSEQWGET PVAFVVRREG DGTSEDALLQ WANAQLGKTQ
RLARLQFIDE LPRSAIGKVL KRELRELAGR
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