Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4786 |
Symbol | |
ID | 7970256 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 5098246 |
End bp | 5099307 |
Gene Length | 1062 bp |
Protein Length | 353 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644795381 |
Product | membrane protein AbrB duplication |
Protein accession | YP_002946657 |
Protein GI | 239817747 |
COG category | [R] General function prediction only |
COG ID | [COG3180] Putative ammonia monooxygenase |
TIGRFAM ID | [TIGR03082] membrane protein AbrB duplication |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.300421 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTCTCTCC GCTTCCTGGT TCGCGTGCTG GCCACGCTGT TGCTCGCGCT CGCCGCGGCC GAAATCTGCC TCGCCCTGCA CACCCCACTG CCGTGGATGA TCGGCCCGCT GCTGGCGGTG TCGCTGGCGT CGATTGCCGG CGCGCCCACG GCCAGCTTCA CGCCGCTGCG CAATGCCGGG CAATGGACCA TCGGCACGGT GCTGGGCCTT TATTTCACGC CGCAGGTGGT GGCGCTGGTG GCCGGCGTCT GGTGGGCCAT TGCGCTGGCC ATCGCCTGGG CCCTGCTGCT CGGCTGGGGG TTCGGGCGCT GGCTGCATGG GCTGCACGCC CGGCGGATGC CGCATGTGCC GGACAGCTCC ATGAGAGCCA CGACTTACTT CGCTGGCGCC ATCGGCGGCG CCTCCGAGAT GACGCTGCTG GCCGAATCGG CCGGCGCGCG CACCGACCTC GTGGCCGCGG CGCACAGCCT GCGGCTGGTG GTGGTGACCA TCGCCATTCC GTTCGCAATG CAGTGGAGCG GCCTGCACGG GCTCGAAGTC AATCCGTCCA CGGTGCGCGA AGTGAACCCC GGCGGGCTCC TGCTGCTGGC GCTGGCCACC GCCGCCGGCG GGCTTGCGAT GCGGGCGCTG GGCCGCACCA ACCCCTGGTT CATGGGGCCG CTGCTGGTGG CGATGAGTTT CACCATCGCC GGCCAGCCGC TGTCGGCCGT GCCCGGCTGG ATGTCGAACA CCGCGCAGCT CGTGATTGCG GTCAGCCTGG GCGTGCGCTT CAGCCGCGAA TTCCTGCACA CGGCGCCGCG CTGGCTGGGA TCGGTGGCGC TGGGCACCGT CGGCATGCTG GTGCTGTGCG CGGGGGCCGC CTGGCTGCTG GCTTGGGCGA CGGGGCTGCA TCCCGCCACC ATGATCCTGG GCACTTCGCC GGGCGGCATT GCCGAGATGT CGATCACCGC CAAGGTGCTG CAGCTGGGCG TGCCGGTGGT GACGGCGTTC CAGGTCTGCC GGCTGGTGGC GGTGCTGTTG CTCGCGGGGC CGATGTACCG ATGGATTTAC CAACGGAAAT GA
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Protein sequence | MSLRFLVRVL ATLLLALAAA EICLALHTPL PWMIGPLLAV SLASIAGAPT ASFTPLRNAG QWTIGTVLGL YFTPQVVALV AGVWWAIALA IAWALLLGWG FGRWLHGLHA RRMPHVPDSS MRATTYFAGA IGGASEMTLL AESAGARTDL VAAAHSLRLV VVTIAIPFAM QWSGLHGLEV NPSTVREVNP GGLLLLALAT AAGGLAMRAL GRTNPWFMGP LLVAMSFTIA GQPLSAVPGW MSNTAQLVIA VSLGVRFSRE FLHTAPRWLG SVALGTVGML VLCAGAAWLL AWATGLHPAT MILGTSPGGI AEMSITAKVL QLGVPVVTAF QVCRLVAVLL LAGPMYRWIY QRK
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