Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4704 |
Symbol | |
ID | 7971714 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 5000528 |
End bp | 5001643 |
Gene Length | 1116 bp |
Protein Length | 371 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644795289 |
Product | Extracellular ligand-binding receptor |
Protein accession | YP_002946575 |
Protein GI | 239817665 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGAAGA TGTTGTCCAC GTCCCGCGCT GCTGCGCTGC TCTTCGCCCT GTCCGCGCTC GGCGCGTCGG CGCAGATCGT GATCGGCCAG TCGGCCGACC TGTCGGGCCC GGTGGCCGCC AGCGTGAAGG AAACCATCAT GGGCTCGCAG CTGGTCATCG ACCAGGTCAA CGCCCAGGGC GGGATCAACG GCGAGCAGGT GGAGGTGATC CGGCTCGACG ACGGCCTGGA CGCGAAGCGC TCGCTGGAGA ACACGCGCAT CCTGATCGAG GACAAGAAGG TGCTGGCGCT GCTGCTCAAC CGCGGCACGC CCAACACCCT GGCCGTGATC CCGCTGCTCG ACAAGTACGG CGTGGCGCTG GTGGGCCCTT CCACCGGCGC GATGGCGCTG CACAAGCCGC TGCAGAAGAA CATCTTCAAC GTGCGCTCGA CCTACCAGCG CGAGGCTGAA AAAGCGGTGC AGCACCTGCA CACCACGGGC ATCCAGCGCA TTGCCGTGGT GCAGGCCGAC GACTCCTTCG GCAAGGACGC GATGGAAGGC GCGAGCAAGG GCTTCGAGAA GGCCGGGCTC GCACCGGCGG TGCTGGCGCT GGCCGACCGC AGCAAGCCCG ACTATTCGGC GATCGTGCCG CAGCTGGTCA AGGCCAATGC GCAGGCGGTG CTGTGGATCG GCTCGGGCAC CGCGGTGACC GAAGGCGTGA AGGCGCTGCG GGCCGCGGGT TCGGCGGCGC AGATCATCAC GCTGTCGAAC AATGCGGCTT CGGGCTTCAT CAAGGAGCTG GGCTCGGCCA GCGCCGGCGT GATCGTCACG CAGGTGCTGC CCTACGAGCG CTCGTTCGGC CATCCGCTGA TCAAGGAGGC GATGGCGCTC GCCAAGGCCA AGGGGCAGAC CGAGCTGTCG CCCGCGCTGC TCGAAGGCTT CGTCGCCACC AAGGTGATGG TGGAGGCGCT GCGCCGCACG GGCCCCAAGC CCACGCGCGC CCGGCTGATT GCCACGCTCA ACAGCTTCCA GTACGACCTG GGCGGCAACA TCGACGTGAG CTATTCGCCG ACGGACCACA CGGGCATCGA CTACGTCGAC CTGTCGATCA TCAGCGAAGG CCGCTTCAAG CGCTGA
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Protein sequence | MMKMLSTSRA AALLFALSAL GASAQIVIGQ SADLSGPVAA SVKETIMGSQ LVIDQVNAQG GINGEQVEVI RLDDGLDAKR SLENTRILIE DKKVLALLLN RGTPNTLAVI PLLDKYGVAL VGPSTGAMAL HKPLQKNIFN VRSTYQREAE KAVQHLHTTG IQRIAVVQAD DSFGKDAMEG ASKGFEKAGL APAVLALADR SKPDYSAIVP QLVKANAQAV LWIGSGTAVT EGVKALRAAG SAAQIITLSN NAASGFIKEL GSASAGVIVT QVLPYERSFG HPLIKEAMAL AKAKGQTELS PALLEGFVAT KVMVEALRRT GPKPTRARLI ATLNSFQYDL GGNIDVSYSP TDHTGIDYVD LSIISEGRFK R
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