| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4689 |
|---|
| Symbol | |
|---|
| ID | 7972900 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4977858 |
|---|
| End bp | 4978853 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644795274 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_002946560 |
|---|
| Protein GI | 239817650 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4586] ABC-type uncharacterized transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCACA TCCTCGTCGA CCAACTCCTC AAGAGCTACC GCATCTCCGA GCGCGACCCG
GGCGTGATGG GCGCGCTGCG CGGCCTCGTG CGGCGCCGCC ACCGCACGGT GCAGGCGCTG
TCGGGCGTGT CGTTCTCGCT CGAGCGCGGC GAGCTGCTGG GCTTCATCGG GCCGAACGGC
GCGGGCAAGT CGACCACCAT CAAGATCCTC TCGGGCATCC TGCGGGCCGA CGGCGGGCGC
GTGGAGATCG ACGGGCGCGA TCCCTTTGCA GACCGCGAGC GGCACGTGGC GCGCATCGGC
GTGGTCTTCG GCCAGCGCAC GCAGCTGTGG TGGGACCTGC CGGTGGGCGA CGGCTTCGAC
CTGCTGCGCG ACATCTATCG CGTCGAGCCG GCGCGCTATC GGCGCACGCG CGACGAACTG
GTCGCGCTGC TGAACCTGGA GCGCGTGCTC GGCCAGCCGG TGCGCCAGCT CTCGCTGGGC
CAGCGCATGC GCGCAGAGAT CGCGGCGGCG CTGCTGCACG AGCCCGACAT TTTGTTTCTC
GACGAGCCGA CCATCGGCCT CGACGCACCC TCGAAGCTCG CGGTGCGCGA CTTCGTGCGC
CGCGCCAACC GCGAGCGCGG CACCACCGTG CTGCTGACCA CGCACGACAT GCACGACATC
GAGGCGCTGG CCGAGCGCGT GATCGTCATC GGCCATGGCC GCGTGCTGGC CGACAGCCCG
GTCGAGGCGC TGCGCGCGCA GGTGATGGCC GAGCGCCGGC TGGTGGTCGA CTTTGCGCAG
GACGCGGCGC TGCCCGACCA GGTGCCCGGC GCCACGGTGC ACATGCGCAA CGGCCAGACG
CTGGTGCTCG ACTTCGATCC CGCGCTGACC TCCGCCCCCG CGCTGATCGC ACGCATCGCG
GCCGAACACG CGGTGGAAGA CATCCGCCTC GAAGGCATGG CCATCGAGGC CGTGATCGCG
CGCTTCTATG CCATGCACGG AGCGGCCGAA GCGTGA
|
|---|
| Protein sequence | MPHILVDQLL KSYRISERDP GVMGALRGLV RRRHRTVQAL SGVSFSLERG ELLGFIGPNG
AGKSTTIKIL SGILRADGGR VEIDGRDPFA DRERHVARIG VVFGQRTQLW WDLPVGDGFD
LLRDIYRVEP ARYRRTRDEL VALLNLERVL GQPVRQLSLG QRMRAEIAAA LLHEPDILFL
DEPTIGLDAP SKLAVRDFVR RANRERGTTV LLTTHDMHDI EALAERVIVI GHGRVLADSP
VEALRAQVMA ERRLVVDFAQ DAALPDQVPG ATVHMRNGQT LVLDFDPALT SAPALIARIA
AEHAVEDIRL EGMAIEAVIA RFYAMHGAAE A
|
|---|
| |