Gene Vapar_4500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4500 
Symbol 
ID7972789 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp4750439 
End bp4750987 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content64% 
IMG OID644795090 
Productprotein of unknown function DUF1003 
Protein accessionYP_002946377 
Protein GI239817467 
COG category[S] Function unknown 
COG ID[COG4420] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGACA AACACCTCAC CCCAAATGCG ACGACCCTGG CGGCCGAAGA TCGGCTTCGG 
CTGGAGTCAC TTCGCAAGCA GCGACGCGCC CATCGGCAAG CCAGATCGGC CAAGCCGCCG 
ACGGCTCCCG AGCATTTCCT TGCAGGCGAA CCGACTCGCA GTCAACGCCT GGCCGACGCG 
GTGGCGGCGA CCGTAGGGTC GTGGCGCTTC ATCATCTTCC AGAGCACGGC CATCGTGCTG 
TGGATCGTCG GCAACGCGAT GACCGGGAAT GGCGCTTGGG ACCCGTATCC GTTCATTCTT 
CTGAACCTGC TCCTGTCGTT CCAGGCGGCC TACACCGCGC CGGCAATCAT GATGAGCCAG 
AACCGGCAGT CCGAGCAGGA CCGGCGCCAC GCGGAAACCG ACTACGAAAT CAATGTCAAG 
GCGGAGTTGG AGATCGAACT GCTGCACGAG AAGATCGACC TCCTGAAGGA ACGCGAACTG 
CTGGCGCTGA CCGACGCGGT GCACGCCCTG ACTCGGCGGA TCGAAGGGTT GTCGGCGCGC 
CCGACCTGA
 
Protein sequence
MNDKHLTPNA TTLAAEDRLR LESLRKQRRA HRQARSAKPP TAPEHFLAGE PTRSQRLADA 
VAATVGSWRF IIFQSTAIVL WIVGNAMTGN GAWDPYPFIL LNLLLSFQAA YTAPAIMMSQ 
NRQSEQDRRH AETDYEINVK AELEIELLHE KIDLLKEREL LALTDAVHAL TRRIEGLSAR 
PT