| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4452 |
|---|
| Symbol | |
|---|
| ID | 7972740 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4692915 |
|---|
| End bp | 4693385 |
|---|
| Gene Length | 471 bp |
|---|
| Protein Length | 156 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644795041 |
|---|
| Product | TadE family protein |
|---|
| Protein accession | YP_002946329 |
|---|
| Protein GI | 239817419 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4961] Flp pilus assembly protein TadG |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGACCA TCCACGCACC CTCACCATCG CGCTATCAGC GCGGCGTGTA TGCAATCGAG
TTTGCGGTGG TATTCATGGT CTTCTTCAGC ATCCTCTATG CCGTCATCTG CTACGGGATG
TTGTTTGCTT TCCGGCTCGG ACTGCAGAAC GCGGCCGAAG ACGGCGCGAG AGCGGCGCTT
CAATATCAGA GTAGTCTGAA TGATCGGAAA AAGCGTGCGG CAGATGTCGC AACCTCTCAA
AGCGATTGGA TGCCGCAAGT GGTGAAGCCC ACCGTGTCGG CACAGATCTG TCGAGTTGAG
GGAATCAACC AATGCTCCCC GACCACTTGC GGACCGTCAT GGAGCCAGCG ATGCCAAGTT
GAAGTTACCG TCTTGGCTAA CAATCTTGGG TCTCTGTTGC CTCCTTTGCC GAGCTTCGCC
GTGCCGACGC AGATCGCAGG CAAAGCCAGC ATGCTGCTTG AGTTGAGGTA A
|
|---|
| Protein sequence | MKTIHAPSPS RYQRGVYAIE FAVVFMVFFS ILYAVICYGM LFAFRLGLQN AAEDGARAAL
QYQSSLNDRK KRAADVATSQ SDWMPQVVKP TVSAQICRVE GINQCSPTTC GPSWSQRCQV
EVTVLANNLG SLLPPLPSFA VPTQIAGKAS MLLELR
|
|---|
| |