Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4450 |
Symbol | |
ID | 7972738 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4691533 |
End bp | 4692468 |
Gene Length | 936 bp |
Protein Length | 311 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 644795039 |
Product | Tetratricopeptide domain protein |
Protein accession | YP_002946327 |
Protein GI | 239817417 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACATCC ACGCACTCAC AAAGCTGACG CACCGCCCAA ATAGTTTTAT CCCGACACGC GCCGCGATTT GTTTGACAAC ACTCGCGATC CTTGGTTGTG CCAGCCCTAA GGATCAATAT GCAGCAAGCG CCGATGCCCA GCAGCGGATG GCCGCCGAAG CCTCTGCCGA TACCAAGGCG GGCACCTCCG TCGACACGAA AGAGACCTAT CTGAAGCTCG TCGAACAGAT GCAGCGGGAG AACCTGTGGT TTGCATCACT GGCGCACATC GATGCACTCG AGCAACGTTG GGGAGTTTCG CCCGAATCCA CACGTCTGCG CGCCGACGCC TTACGGCAGA CCGAGCAAGC GGCGCAGAGC GAAAAGGCGT ACAGGCGACT GATGGGCACA CCGCTCGAAG GCGCCGGCTA CCGGGGTCTG GGCCTCCTGG CTGGTGCTCG CAGCAACTAC GCTGAAGCCG TACTGCTTCT GAAACAAGCC CAGCGCCACG CGCCGACAGA TGCTCTCCTG CTGAGCGACT TGGGCTATGC CCAATTGCGA TCAGGTTCGA CGGATGAAGC CCGGCTTCCC TTGATGCAGG CACTGCAGCT TCGCCCTGAC AGTGCGCAGG CACAGGCAAA CCTCGCGCTA TATCTCGAAC TCACCAATCA GCAAGAGCAA GCAGCGGCCA TGATGGACGC GAACCGGATG TCGCCCGCCG CGCGTTCGGC GGTCAAGGAA GCCGCGCAGC AACTGCGTCG CGGCGGAACT GTCGCTATCA CCCCACCTCC CAGTGCCGGG ACGCCGGTCC GCGACGAAGT TGCTCCGCCG CTCGTTCTCA AAGCTTCGCG TTCGTCCAAC CTGATTGGCG TACGCACCGC CATTCAGTCG AATCCAGCTG CAAACGCCTC CTCGACAACC CTGTCACCGA TCTCGATTTC ACGAGGTACA CCATGA
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Protein sequence | MNIHALTKLT HRPNSFIPTR AAICLTTLAI LGCASPKDQY AASADAQQRM AAEASADTKA GTSVDTKETY LKLVEQMQRE NLWFASLAHI DALEQRWGVS PESTRLRADA LRQTEQAAQS EKAYRRLMGT PLEGAGYRGL GLLAGARSNY AEAVLLLKQA QRHAPTDALL LSDLGYAQLR SGSTDEARLP LMQALQLRPD SAQAQANLAL YLELTNQQEQ AAAMMDANRM SPAARSAVKE AAQQLRRGGT VAITPPPSAG TPVRDEVAPP LVLKASRSSN LIGVRTAIQS NPAANASSTT LSPISISRGT P
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