| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4267 |
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| Symbol | |
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| ID | 7971351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4505317 |
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| End bp | 4508724 |
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| Gene Length | 3408 bp |
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| Protein Length | 1135 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794854 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_002946146 |
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| Protein GI | 239817236 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCACC TGATCGCCAC ACCGGAGTTC CAGCTCAACG CACTCGTCGC GGGCCTGGCC
CTCCTCCTGA TGACGTGGGG GCGGATCGAC CGCACCTCCC ACCGCGTGCT GTTCGGCGCG
CTGACCGCGC TGCTGCTGAT GCGCTATGCC GTCTGGCGCG TGGTTGCGAC CATGCCGCCT
TCGGACCTGG GCTTCGAGAC CCTGTTCGCC TGGGTGTTCC TGTGCTTCGA GCTCACGGCC
ATCGTCTACA CGCTGATGTC CATCCACATG CTGGTGCGGC GGCGCGACAA CCACCAGCTG
GCCGACCGCG GCGAAGCCCT GCTGCGCGGC CGCGGTGCGC AGGTGCCGGC CGTGGACGTG
TTCATCTGCA CGTACAACGA GGATCTGGCG GTGCTGGAGA AGACCGTCAT TGCCGCGCAG
GCCATCGACT ACCCGAACCT GAACGTGTGG GTGCTCGACG ACACCCGTCG CGACTGGCTG
CGCGAGTATT GCGAACGCAA GGGCGTGCAC TACGCGCGCC GGCCCGACAA CAGCCATGCC
AAGGCCGGCA ACCTCAACAA CGGCCTGCGG CTGTCGGCGA GCGTGACCAA TGCGCCCTAC
ATCCTGGTGC TCGATGCCGA CTTCGCGCCG CAGCGCCAGA TCGTCTACCG CATGCTGGGC
CTGTTCGCGG ACCGCAAGGT CGGGCTGGTG CAGACGCCGC AGTTCTATTA CAACGCCGAC
CCCATCCAGC ACAACCTGCG CGCCACCGAC AGCTGGGTCG ACGAGCAGCG CGTGTTCTTC
GACGTGCTGC AGCCCGCCAA GGATGCCGCC GACTCGGCCT TCTGCGTGGG CACTTCCTTC
ATCGTGCGGC GCGACCTGAT CACCGCCGCG GGCGGCTTTC CGGTGGGCAG CGTGTGCGAG
GACATCCACA CCACCTACCT GCTGCTGCGC CACGGCCACA TCACGCGCTG GCTCGGCGAG
CGGCTGTCGA ACGGCCTGTC GGCCGAGAGC ATCATCGACT ACATCAACCA GCGCAGCCGC
TGGTGCCTGG GCACGGTGCA GCTCGCGCTG CTGCCCAACG GCCCGCTGCG CGGCCGGGGC
TTCAGTTTCT CGGCGCGGAT GCACTTCCTG CACGGGCTGC TGCACTGGCT CGGCAAGCCG
TTCATGGCCA TGGTCATGCT GGCGCCGGCG CTCTACTGGT ATGCCGGAGT GTCGGTGTTC
CATGCCACGC CGCAGGCCTT TGCCTCCTTC GGGCTGCCGC CGCTCCTCAT GTTCTGGGCC
TACAGCTACT GGATCAGCGG GCGGCGCTGC CTGCCCGTGT TCAGCGAGGT GAGCCAGCTG
GTGGCGGCCA TGGCCGTCAC CAGCACGCTG GCCAGCGCCA TGCTGCGGCC CTTCGGGCGG
CCCTTCAAGG TCACGAACAA GGGGCTGGAC CGCACCAAGA CCGTCGTGCA CTGGAAGCTG
GTCGCGATGT TCGGCGGGCT TCTGCTGGCG CTGCAGCTCG GCGGCGCGTC GGTCGCGCTG
AGCGGCGAGG CGCTCACGCC TGGCGACGAG CTCAATCTGG TGTGGACCGG TATCGCACTG
CTGCTGTGCC TGGCCGCGCT CATGGCCTGC GTCGACCTGC CGCGGCCGGA GCAGGAAGAG
CGCTTTCCGT GGCGTGCGCG CACCCGGGTG CGCACCGCGG CGGGCGAGGG CGAATCGCGC
TTCGTCAACA TCGCGGCCGA CGGCGCGCTG CTGGAAGCCA AGGCCCTGCT GAAACGCCTG
CGCGTGGGGC AGCCGCTGGA GGTCTACGTC GATCCGGTGG GATGGCTTCC GGCCCGCCTG
GCCGCCAGGA GTGCCGCGGG CGCCGAGCTG CGCTTTGCCG GCACCGAGGC CCAGCGCGAG
CAATTGGTGA GCCACGTGTT CAACGTGCCG CCGAGCCACG TCGCGGTCCA GGTGCGGCCA
TGGAAGGCCG CCTCGGCCTT GCTGGCGAGC GCGGGCTTCG GATCTCCCGG CGCCGGCTTC
GTGCGCCTGT CCCTGCGGCT GCTGCTGCTG GTGCTGGCGA CCTGCGTGGT GCTGGTGGTG
AGCGGATGCA ATCTCACGCC GCCCCTCAAG CAGCCCGACC TCACGGTGCC TTCGCAATGG
CCGGCCGGCA CGACGGCGCC GAACGCGGAG CCCGTCGACT GGCGCAGCTT CGTGCAGGAC
GACGAACTGC GCGGGCTCAT CACCACCGCC CTCGCGCAGA ACCGCGACCT GCGCGCCTAT
GCCGCGCGTG CCCGCGAAGC CCGGGCCGTG TATGCCGGCA GCCGCGCCTC GCTGTTTCCG
CAGATCGGCC TGTCGGGCCA TGCGCAGCGG GCGCAGACCA CCCCGCAGGG CTCGCTCAGC
CCGCTGGGCA ACATTCCGAC CGACGGCCGG ACATCGAACA GCTTCGACAT CCAGGCCGGC
GTGACTTCGT ACGAGCTCGA CTTCTTCGGC CGCCAGCAGA GCGCGACCCA GCAGACCGGC
TCGCTGGCCG AGGCGGGCAA CAAGGACTTT GCGGCCGCCC ACATGAACCT GGTGGGAGAG
GTGTCGAATG CCTACCTCAC GCTGCGCGCC GACCGCGCCC TGCTCGCGCT GGCCAATGCC
AACGAGTCCG GCCTGGCCGC CAATGCCGAC ATGATCGGGC GCGCCAAGGC GGCGGGCGGC
GCGGCGCAGC TGGACGTGTA CCGCGCGCAG TCGCTGCTGC AGAACGCCCG CGTCAAGCAG
GAAGAATTCC GCATGCGCGT CGCGCAGGAT CTCCAGTGGC TGAACGTGCT GGTCGGCCAG
CCGGTGTCGC CCGACACGGG CAGCGCACGG CCGTGGCCGG AGCGCTCCAC TGCGCAGGTG
GCGGCCGGCC TGCCGTCCAG CCTGCTGCAG CGCCGGCCCG ACCTGCTGGC GGCCTATTCG
CGCGTCGAGG CGGCCAATTC GGGCGTGGGC GCGGCCAAGG CCGCGATGCT GCCGACCATC
TCGCTCACCG CGCTCGCGGG CGGCGTGAGC CGGGAGCTGT CGACGCTGCT GAGCAGCGGC
AACAGCAGCT GGGCCGGGGT GCTGGGGGTG TCGCTGCCGC TGTTCGACTG GGGCCGCCGC
TCGGCCAACA TCACGGCCAA CGAGGAGCGG CTGGCAGCGG CCATGGCGTC CTATGAAAGT
GCCGCGCAGA TGGCATTCCG AGAAACCGCC AACGCCCTGA TCGCCGACGA CCACCTGCGC
CCGCAGCTGG AAGCGCAGCA GGCCCGCGTG CAGGCGCTGG AGAAGGTGGC AAACATCGCG
CGCACGCGCT TTCGCAGCGG CCTGGAAGAC TACTTCGCGA GCCAGGACGC CCAGCGCGAG
CTCTATGCCG AGCAGCAGCA GCTGATCGAG CTGCAGCTCA AGGAGGCCGT GAACAGGGTC
AACCTCTACA AGGCGCTGGG CGGAGGGTGG CAGGGCGCAC AGGCCTGA
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| Protein sequence | MSHLIATPEF QLNALVAGLA LLLMTWGRID RTSHRVLFGA LTALLLMRYA VWRVVATMPP
SDLGFETLFA WVFLCFELTA IVYTLMSIHM LVRRRDNHQL ADRGEALLRG RGAQVPAVDV
FICTYNEDLA VLEKTVIAAQ AIDYPNLNVW VLDDTRRDWL REYCERKGVH YARRPDNSHA
KAGNLNNGLR LSASVTNAPY ILVLDADFAP QRQIVYRMLG LFADRKVGLV QTPQFYYNAD
PIQHNLRATD SWVDEQRVFF DVLQPAKDAA DSAFCVGTSF IVRRDLITAA GGFPVGSVCE
DIHTTYLLLR HGHITRWLGE RLSNGLSAES IIDYINQRSR WCLGTVQLAL LPNGPLRGRG
FSFSARMHFL HGLLHWLGKP FMAMVMLAPA LYWYAGVSVF HATPQAFASF GLPPLLMFWA
YSYWISGRRC LPVFSEVSQL VAAMAVTSTL ASAMLRPFGR PFKVTNKGLD RTKTVVHWKL
VAMFGGLLLA LQLGGASVAL SGEALTPGDE LNLVWTGIAL LLCLAALMAC VDLPRPEQEE
RFPWRARTRV RTAAGEGESR FVNIAADGAL LEAKALLKRL RVGQPLEVYV DPVGWLPARL
AARSAAGAEL RFAGTEAQRE QLVSHVFNVP PSHVAVQVRP WKAASALLAS AGFGSPGAGF
VRLSLRLLLL VLATCVVLVV SGCNLTPPLK QPDLTVPSQW PAGTTAPNAE PVDWRSFVQD
DELRGLITTA LAQNRDLRAY AARAREARAV YAGSRASLFP QIGLSGHAQR AQTTPQGSLS
PLGNIPTDGR TSNSFDIQAG VTSYELDFFG RQQSATQQTG SLAEAGNKDF AAAHMNLVGE
VSNAYLTLRA DRALLALANA NESGLAANAD MIGRAKAAGG AAQLDVYRAQ SLLQNARVKQ
EEFRMRVAQD LQWLNVLVGQ PVSPDTGSAR PWPERSTAQV AAGLPSSLLQ RRPDLLAAYS
RVEAANSGVG AAKAAMLPTI SLTALAGGVS RELSTLLSSG NSSWAGVLGV SLPLFDWGRR
SANITANEER LAAAMASYES AAQMAFRETA NALIADDHLR PQLEAQQARV QALEKVANIA
RTRFRSGLED YFASQDAQRE LYAEQQQLIE LQLKEAVNRV NLYKALGGGW QGAQA
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