Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4074 |
Symbol | |
ID | 7974396 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4318729 |
End bp | 4319655 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644794660 |
Product | transcriptional regulator, LysR family |
Protein accession | YP_002945953 |
Protein GI | 239817043 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCGCTACC TGGTCGCGCT CAGCGAGCAC AAGCATTTCG GACGCGCGGC GCAGGCCTGC CACATCACTC AGCCGGCGCT GTCGAATGCG CTGCGCTCGC TCGAAAGCGA ATTTGGCGTG GTCATCGTCA AGCGGGCGCG CGTCTACGTG GGCCTCACGC ACGAAGGCGA GCGGGTGCTG GCCACGGCGC AGCGCATGCT GCGCGACAAC GAGGTGCTGC AGCAGGAGCT GCGCAGCGAA GAGGGCCATC CGCGCGGGCG GCTGCGCATG GCGGCCGTGC CCACCGCCAT TCCGATGCTG TCGCGCTTTG CCGCGATGCT GCACGAGATG CATCCGGGCA TCGTGCCGGC GGTGCTGTCG ATGAGTTCGC AAGAGCTGGA AACGGGGCTC GAAAGCCTCT CGGTCGACCT CGCGCTCGGC TACACCGAGC GCATGCATTT GCCGGGCATC AAGCTCACGG CATGGCCGCA GAGCGTGGAG CACTACTTCC TGCTGCGGCG CGCGGCCAAG CCCTCGGCCG ACCGGCTGCG CATCGGCCAG CCGATCTCGT GGGCCGAGGC CGGCCAGCGG CCGCTGTGCC TGCTCACGCC CGACATGCAC AACCGCTCCA TCATCGACCA GGCGCTGCGC GACGCCGGCA TTGCGCTGGA GCCGGCCATC GAAACCAACT CGGTACTTAC CCTTGCATTG GCCGTGCTCG CGGGCACCGT GAGCAGCGTG CTGCCGGGGT CGATGGTCGC GGCCGTGCGC AGTTACCGCG AGCTGGAGGC CTTGCCGCTG GTCGCCCCCG AGGTCAAGAC GCCGCTGGGC TTCATGACCC AGACCGGCGT GCGCCCCTCG CGCGCGCTCG ATGCCGCCCT GGTGTTCCTG CAGACGCCGG CATGGCGCGA GCAGGTGCGG CTGCACAGCG GCGCGCTCGG CGAATAG
|
Protein sequence | MRYLVALSEH KHFGRAAQAC HITQPALSNA LRSLESEFGV VIVKRARVYV GLTHEGERVL ATAQRMLRDN EVLQQELRSE EGHPRGRLRM AAVPTAIPML SRFAAMLHEM HPGIVPAVLS MSSQELETGL ESLSVDLALG YTERMHLPGI KLTAWPQSVE HYFLLRRAAK PSADRLRIGQ PISWAEAGQR PLCLLTPDMH NRSIIDQALR DAGIALEPAI ETNSVLTLAL AVLAGTVSSV LPGSMVAAVR SYRELEALPL VAPEVKTPLG FMTQTGVRPS RALDAALVFL QTPAWREQVR LHSGALGE
|
| |