| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4056 |
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| Symbol | |
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| ID | 7974378 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4297738 |
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| End bp | 4300254 |
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| Gene Length | 2517 bp |
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| Protein Length | 838 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644794643 |
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| Product | protein of unknown function DUF214 |
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| Protein accession | YP_002945936 |
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| Protein GI | 239817026 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGCCT CCTTCCGCCT TGGCTGGCGC ACCTTGTGGC GCGATCTGCG CGCCGGCGAA
CTGCGCCTCT TGATCGTTGC CGTGCTGCTG GCCGTGGCCG CGCTCACGGC GGTCGGCTTC
TTTGCCGACC GGCTGAAGGG AGGCCTGCAG CGCGATGCGC GGCAACTGCT CGGCGGCGAC
GCGGTGGTCG TGAGCGACAA CCCCACGCCT GCGACCTTCA TCGCGCAGGC CCGCGCCTTC
GGGCTCGAGG GCTCCGGCAC CTACGGCTTC CCGACCATGG CGCGGGCCGA CGACGCCCAG
GGCGGCGCGA GCAAGCTGGT GGCCCTGAAG GCGGTGGCCG CGGGCTATCC GCTGCGCGGC
AACCTGCAGA CCGCCAGCGC CCCCGATGCG CCCGGCAGCA TCACGCGCGA CATTCCGCCG
GCGGGCGAGG TCTGGGTCGA CGCTTCTCTG CTGGATTCGC TCGCGCTCAA GGTGGGGGAC
GCGCTTCTTC TTGGCGACAG CAGTTTGCGC ATCGGCCGCG TGATCACGCT GGAGCCGGAT
CGCGGAGTGG GCTTCATGAG CTTTGCGCCG CGCGTGATGA TCAACCAGGC CGACGTGCCG
CGCACCGGCC TCGTGCAGCC TGCGAGCCGT GTCGGCTACC GCTATGCCGT GGCCGGCGAG
AACGCGGCCG TCAAGCGCTT TTCCGACTGG GCCGAGGCCG CCATCAAGAA GGGCGAGCTG
CGCGGCGTGC GGCTCGACTC CTTCGAAGGC GGGCGCCCCG AAATGCGCCA GACGCTGGAC
CGCGCCGAGA AATTCCTGAG CCTGGTCGCG CTGCTCGCGG CGCTGCTGTC GGCCGTGGCG
GTGGCGCTGG CCGCGCGCGG CTTCGCGGCC AGCCACCTGG ACGACTGCGC CATGCTGCGC
GTGCTCGGCC AGAGCCAGCG CACCATCGCG CTGGCCTATT CGTTCGAATT TGCCGTCGTC
GGCATCGTGG CCAGCAGCCT GGGCGTGGCG ATCGGCTTTG GCGTGCACTA CGTGTTCGTG
GTGCTGCTCG CCGGGCTGGT CGAAACGGCG CTGCCCGCTG CCACCTTGTG GCCCGTGGCC
TTCGGCCTGG GCATGGGGCT CACGCTGCTG TTCGCCTTCG GCCTGCCGCC GGTGCTGCAG
CTGGCCCGGG TGCCGCCGCT GCGCGTGATC CGGCGCGACG TCGGCGGGCT CAAGCCCGCG
TCGCTCGCGG TGCTGGGCAT TGGCGTGGCC GGCTTCGCGG CCCTGCTGAT CGCGGCCAGC
AGCGACCTGA AGCTGGGCCT GATCGCCGTC GGCGGTTTCG CTGGCGCGGT GGCCGTGTTC
GCGCTCTTGA GTTGGCTCGC GGTGAAGGTG CTGCGCCGCA GCGTCAATGA AAGCACCGCG
CCGCGCTGGC TGGTGCTGGC CACGCGCCAG ATCTCGGCGC GGCCGGCCTA CGCGGTGGTG
CAGGTCAGCG CGCTGGCCGT GGGCCTGCTT GCGCTGGTGC TGCTGGTGCT GCTGCGCACC
GACCTGGTCG CGAGCTGGCG CAAGGCCACG CCGCCCGATG CGCCCAACCG CTTCGTCATC
AACGTCATGC CCGACCAGAG CAGCGCGTTC CAGAAATCGC TGCGCGATGC CGGCGTGCGC
AAGTTCGACT GGTATCCGAT GATCCGCGGC CGCCTCGTGG CCGTCAACGA CAAGCCGGTG
TCGCCCGACG ACTACCTGGA AGACCGCGCC AAGCGCCTGG TGGACCGCGA GTTCAACCTC
AGCAACAGCG TGGAGGCGCC GCCGCACAAC AGCATCGTGG CGGGCGCATG GAAGCCCGAT
GCGCCCGGCG AAGTGAGCGT GGAAGAAGGC CTGGCCGAGA CGCTCGGCCT CAAGCTCGGC
GACGTGCTGC GCTTCGACAT CGGCGGCATG CAGAATGATG CGCGCATCAC CTCGCTGCGC
AAGGTCGACT GGGGTTCGAT GCATGCGAAC TTCTTCGTGA TGTACACAGT GGCCGCGCTG
CCCGACGTGC CGGTGACCTA CATGGGCGCC TTCCGCGCGC CCGAAACCCG CGGCTTCGAC
AACGCGCTGG TGCGCAGCTT CCCCAACGTG ACCAACGTCG ACATGAGCGC CACCATCAAC
CAGGTGCAGC GCGTGCTCGA CCAGGTGATC CGCGCGGTCG AGTTTTTGTT CGGCTTCACG
CTCGCGGCGG GGCTGGTGGT GCTGTTTGCC GCGGTCACGG CCACGCGCGA GGAGCGCGCG
CGCGAGTTCG CCGTGATGCG CGCGGTGGGC GCGCGGGCCA GCCTGCTGCG CCAGGTGCAG
CGCGCCGAGC TGGCGGGCGT GGGCCTGCTG GCGGGCTTTC TCGCGAGCAT CGTGGCGTCG
GCCATCGGCT GGGGCCTGGC GCGCTATGTG TTCGACTTCA CCTGGACGGC CTCGCCCCTG
GTGCCGATTG CCGGTGCGCT CGCGGGCGCG GTGCTCGCGC TGGCGGCGGG CTGGTGGGGC
TTGCGCGATG TGCTGTGCAG GCCCGTGGTC GACACGCTGC GGCGCGCGGC GGAATAG
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| Protein sequence | MNASFRLGWR TLWRDLRAGE LRLLIVAVLL AVAALTAVGF FADRLKGGLQ RDARQLLGGD
AVVVSDNPTP ATFIAQARAF GLEGSGTYGF PTMARADDAQ GGASKLVALK AVAAGYPLRG
NLQTASAPDA PGSITRDIPP AGEVWVDASL LDSLALKVGD ALLLGDSSLR IGRVITLEPD
RGVGFMSFAP RVMINQADVP RTGLVQPASR VGYRYAVAGE NAAVKRFSDW AEAAIKKGEL
RGVRLDSFEG GRPEMRQTLD RAEKFLSLVA LLAALLSAVA VALAARGFAA SHLDDCAMLR
VLGQSQRTIA LAYSFEFAVV GIVASSLGVA IGFGVHYVFV VLLAGLVETA LPAATLWPVA
FGLGMGLTLL FAFGLPPVLQ LARVPPLRVI RRDVGGLKPA SLAVLGIGVA GFAALLIAAS
SDLKLGLIAV GGFAGAVAVF ALLSWLAVKV LRRSVNESTA PRWLVLATRQ ISARPAYAVV
QVSALAVGLL ALVLLVLLRT DLVASWRKAT PPDAPNRFVI NVMPDQSSAF QKSLRDAGVR
KFDWYPMIRG RLVAVNDKPV SPDDYLEDRA KRLVDREFNL SNSVEAPPHN SIVAGAWKPD
APGEVSVEEG LAETLGLKLG DVLRFDIGGM QNDARITSLR KVDWGSMHAN FFVMYTVAAL
PDVPVTYMGA FRAPETRGFD NALVRSFPNV TNVDMSATIN QVQRVLDQVI RAVEFLFGFT
LAAGLVVLFA AVTATREERA REFAVMRAVG ARASLLRQVQ RAELAGVGLL AGFLASIVAS
AIGWGLARYV FDFTWTASPL VPIAGALAGA VLALAAGWWG LRDVLCRPVV DTLRRAAE
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