Gene Vapar_4026 details

Gene Information

• Locus tag: Vapar_4026
• ID: 7974591
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 4269997
• End bp: 4270599
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 644794612
• Product: two component transcriptional regulator, LuxR family
• Protein accession: YP_002945906
• Protein GI: 239816996
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.105506
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCATTT ATGTCATCGA CGACCACCCC CTGATGCGCG ACGCGATCGT GATGGTGCTG 
CGGCGTCTGC GGCCGGCCGA AAACATCGTC GAGCTCGAGC GCCTCGACAA GCTCGCGAGT 
GCGGTCCAGC AGCGCGGCGA GCCAACGCTT TTCTGCCTCG ACCTGAAGCT GCCCGACACC 
AATGGCGTCT CGGGCGTGGT CGCTGTCAAG CAGGTCTATC CCAACGTGCC GATCGCCGTC 
TATTCGGCAG CACCGGCCGG GGACATGGAA GACGCCTGCA TCGAAGCCGG CGCCGACACC 
TACATCGAGA AGTCGGCCAG CTCGGCCGAA CTGGCCGCCG CGCTGCGCGG CCTGCTGATG 
GCGGGCTCGG AAGAGGCGGA CGAGCCGGCG CTGGCCAGCA ACAGCAAGCT GTCGAAGCGC 
CAGACGCAGC TGATCGCGAT GCTCGACAAG GGCATGAGCA ACCGCGACAT CGCCACCGAC 
CTCGAGATCA GCGAGCACAC CGTGAAGGTG CACCTGTGGC GCCTGTTCCG CCGTCTGGGC 
GTGAAGAGCC GCACGCAGGC GCTGCATTAC GCGCGGACCA ATGGGTTGCT TTCCGGAAGC 
TGA 

 

Protein sequence

MSIYVIDDHP LMRDAIVMVL RRLRPAENIV ELERLDKLAS AVQQRGEPTL FCLDLKLPDT 
NGVSGVVAVK QVYPNVPIAV YSAAPAGDME DACIEAGADT YIEKSASSAE LAAALRGLLM 
AGSEEADEPA LASNSKLSKR QTQLIAMLDK GMSNRDIATD LEISEHTVKV HLWRLFRRLG 
VKSRTQALHY ARTNGLLSGS