Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3976 |
Symbol | |
ID | 7974541 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4219632 |
End bp | 4220834 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644794562 |
Product | cystathionine beta-lyase |
Protein accession | YP_002945856 |
Protein GI | 239816946 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
TIGRFAM ID | [TIGR01324] cystathionine beta-lyase, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.758953 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCGATT CGCCCAAAGA CACCGCAGGC CACGCTCTCG ACACCCGGCT CGCCCATACC GGAAAGGCCC CGGCCTACTT CGGCGGCTCG CCGGTCAACA CGCCGCTGGT GCGCGCGAGC ACCGTGCTGT TCGACAGCGT GGCCGCCATG CGCGAGACGC GCGCGCGGCG CGGCGAAGAG CGCGCCTTCA GCTACGGCGC ACGCGGCACG CCCACCACCT TCGCGCTCGA AGACGCGGTG AGCGAACTCG AAGGCGCCCA CCGCACGCGC CTCTTTCCCA CCGGCCTTGC CGCCATCGGC ATGGTGCTGC TGTCGTACCT GAAGCCCGGC GACCATGTGC TGATGTCGGA CAGCGTGTAC GAGCCGGCGC GCAAGCTCGT GCACTCCTTC CTCGATCCCT ACGGCATCCG CTGCACCTTC TTTGCCGCGG ACGGCAGCGG TGTGGAGGAA CTGTTCGAGC CGAACACCAA GCTCGTGTAT GCCGAATGCC CGGGCTCGCT GGTCTACGAG ATGTGCGACC TGCCCCGGCT CGCCGAGCTG GCCCATGCGC GCGGCGCGCT CGTTGCCGCG GACAACACCT GGGGCTCGGG CGTTCAATAC CGGCCGCTTG CACTGGGCGC CGACATCTCG CTGATGGCCG CCACCAAGTA CCTCTCGGGC CACTCCGACG TGATGATGGG CACCGTGGCC ACCACGCGCG AAGCCTGGCA GCCGCTCAAC GAGCGCTGCG ACGCCTTCGG CATGACGGTG AGCCCGGACG ATGCCTGGCT GGTGCTGCGC GGCATGCGCA CGCTGTCCGC GCGGCTGCAG ATGCACGAGC GGCATGCAAT GGAAGTGGCG TACTGGCTGC AGGCGCGGCC CGAAGTGGCG GCGGTGTTCT GCCCCGCGCT GCCGCAGCAC GCGGGCCACG CGCTCTGGAA GCGCGACTGC CGCGGCACCA ACGGGCTGGT CTCGTTCGAG CTGCAGCCGG GCACCGAGAA CGCCGCGGTC GAGCGCTTCG TCGATGCGCT GTCGCTGTTC GGCCGGGGCT CGTCCTGGGG CGGCTATGAA AGCCTGGTGG CTTGGGCCGA CATGCGCGCG GCGCGCAGCG TGACCGACTG GAGCACGCGC GGCGCGGTCG TGCGGCTGCA CGTGGGGCTC GAGTCGCCTT CGGACCTGCT GCGCGATCTT GAATGCGGCT TTGCGGCGCT GGGTGCCGGC TGA
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Protein sequence | MSDSPKDTAG HALDTRLAHT GKAPAYFGGS PVNTPLVRAS TVLFDSVAAM RETRARRGEE RAFSYGARGT PTTFALEDAV SELEGAHRTR LFPTGLAAIG MVLLSYLKPG DHVLMSDSVY EPARKLVHSF LDPYGIRCTF FAADGSGVEE LFEPNTKLVY AECPGSLVYE MCDLPRLAEL AHARGALVAA DNTWGSGVQY RPLALGADIS LMAATKYLSG HSDVMMGTVA TTREAWQPLN ERCDAFGMTV SPDDAWLVLR GMRTLSARLQ MHERHAMEVA YWLQARPEVA AVFCPALPQH AGHALWKRDC RGTNGLVSFE LQPGTENAAV ERFVDALSLF GRGSSWGGYE SLVAWADMRA ARSVTDWSTR GAVVRLHVGL ESPSDLLRDL ECGFAALGAG
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