Gene Vapar_3962 details

Gene Information

• Locus tag: Vapar_3962
• ID: 7970391
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 4207114
• End bp: 4207590
• Gene Length: 477 bp
• Protein Length: 158 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644794548
• Product: CMP/dCMP deaminase zinc-binding
• Protein accession: YP_002945842
• Protein GI: 239816932
• COG category: [F] Nucleotide transport and metabolism; [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0590] Cytosine/adenosine deaminases

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACACGCG ACCAGATCAT CCGCGCGCTG CGCCGGGCCG ACGAAGTGGC CCGCCGCGCC 
ATGGCCATGG GCCGCCACCC CTTCGGCGCG GTGCTCGTCG CGCCCGACGG CGAAACCATC 
CTGGCCGAGC AGGGCAACAT CGACACGGTG AACCACGCCG AAGCCACGCT GGCGCGCCAC 
GCGGCGCAGA ACTGGCCGGC CGACTACTTG TGGCAATGCA CGCTGGTCAC GACCTTCGAG 
CCCTGCGCCA TGTGCGCGGG CACCAGCTAC TGGGCCCACA TCGGCCGCAT CGTCTACGGC 
GCCGAAGAAA GCGCCCTGCT CGCGCTCACG GGCGACCACC CCGAGAACCC CACGCTGAGC 
CTGCCCTGCC GCGAAGTGTT CGCGCGCGGG CAGAAGAAGA TCGAGGTCAT CGGGCCGGTG 
CCCGAAGTGG CGGAAGAAAT GATCGCCACG CACCGCGGGT TCTGGGAAGC GCGTTAG 

 

Protein sequence

MTRDQIIRAL RRADEVARRA MAMGRHPFGA VLVAPDGETI LAEQGNIDTV NHAEATLARH 
AAQNWPADYL WQCTLVTTFE PCAMCAGTSY WAHIGRIVYG AEESALLALT GDHPENPTLS 
LPCREVFARG QKKIEVIGPV PEVAEEMIAT HRGFWEAR