| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3902 |
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| Symbol | |
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| ID | 7970331 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4134463 |
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| End bp | 4135614 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794488 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_002945782 |
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| Protein GI | 239816872 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4603] ABC-type uncharacterized transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTAAGC TCGAACCGCG CCCGGAGCTG TCGCGCTTCT GGACCTTTGC CTCGCCGATC
CTCGCGCTGC TGATCACCGT GCTGATCGGC GTGGCGCTGT TCGCCGCGCT CGGCAAGGAC
CCGGTCAAGG GCCTCTTGGT GTTCTTCTAC GAGCCGATCA AGAGCGGCTA TGCGATCGGC
GAGCTCACGA TCAAGGCGAC GCCGCTGCTC ATCATCGCGC TCGGGCTGGC GGTGTGCTTT
CGCTCCAACG TCTGGAACAT CGGCGCCGAG GGCCAGTTCG TGTTCGGCGC CATTGCCGCG
GGCGGCGTCG CGCTGATGGC CGACAAGAGC ACGGGCTCGT GGATCGTGGT GGCCATCCTC
GTTGCGGGCA CGGTCGGCGG CATGGTGTGG GCGGGCATCG TGGCCTTCCT GCGCGACCGG
TTCAACGCCA ACGAAATCCT CGTGAGCCTG ATGCTGGTGT ACGTGGCCAC GCTGCTGCTG
GGCTACATGG TGTTCGGCCC CTGGAAGGAT CCGCAGGGCT ACAACTTTCC GCAGTCGAAG
ACCTTCGAGG CCGTGACGCA GATCCCGCGG CTCTTCAAGG GTTCGCGCGT GAGCATCGGG
CTGATCATCG CGCTGCTGGG CGTGGGCGCG CTCTGGGTGT TCCTGTTCCG CACGCGGGCA
GGCTTTGCGC AGCAGGTCGG CGGGCTCGCG CCGGCGGCCG CGCGCTATGC GGGCTTCTCG
GCACGCCGCG CCATCTGGAT CGCGCTGCTC ACCTCGGGCG GCGCGGCGGG CCTGGCCGGT
GCGCTCGAAG TGGCAGGCCC GCTCGGCCAG CTCACGCCCT ACGTGCCGGC CGGCTACGGC
TTCGCGGCCA TCATCGTGGC TTTCGTCGGC CGGCTGCATC CGGTGGGCAT GGTGTTCTCG
GCCATCCTCA TGAGCATGTT CTACATCGGC GGCGAGCTTG CGCAGTCGCG CCTGGGCCTG
CCCAAGTCGC TGACCGGCGT GTTCCAGGGT TTGCTGCTCT TCACGCTGCT GGCCTGCGAC
ACCTTGATCG CCTATCGCAT CCGCCGCAAG GCCGCGGCAA AAGCGGCGGC TTCCACGGGA
ACGACGAGTT CGCTGCAAGC CAGCACGCCG CTGACGGCGC CGGCCGTGCG TTCGACCGAA
GGAGTGCTTT GA
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| Protein sequence | MLKLEPRPEL SRFWTFASPI LALLITVLIG VALFAALGKD PVKGLLVFFY EPIKSGYAIG
ELTIKATPLL IIALGLAVCF RSNVWNIGAE GQFVFGAIAA GGVALMADKS TGSWIVVAIL
VAGTVGGMVW AGIVAFLRDR FNANEILVSL MLVYVATLLL GYMVFGPWKD PQGYNFPQSK
TFEAVTQIPR LFKGSRVSIG LIIALLGVGA LWVFLFRTRA GFAQQVGGLA PAAARYAGFS
ARRAIWIALL TSGGAAGLAG ALEVAGPLGQ LTPYVPAGYG FAAIIVAFVG RLHPVGMVFS
AILMSMFYIG GELAQSRLGL PKSLTGVFQG LLLFTLLACD TLIAYRIRRK AAAKAAASTG
TTSSLQASTP LTAPAVRSTE GVL
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