| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3557 |
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| Symbol | |
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| ID | 7972183 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3754055 |
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| End bp | 3755383 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644794142 |
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| Product | outer membrane efflux protein |
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| Protein accession | YP_002945440 |
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| Protein GI | 239816530 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCACGC TCTTCGTGCC GCTGGCCGTC ATGGCCTTGG CGGTGCCCCC GGCATTTTCA
CAACCCGCTG CCGGTTCCAA CCCTTCGCCG ATCCGGCACA CGGCCGCGGC AACGGCGGAG
CCCGCCGGCC CGCTGGACCT GCGCAGCGCG CTCGCGCTTG CGCTGCGCTT CAATCCCGGG
CTCTCGTCCG CCTCGCGCGA GCGCGAGGCC GGCGATGCGG CCGTGCTGCA GGCCGGTGCC
TGGCCCAATC CGGTGTTCGA CGCGCAGGTG GAAGACCTGC GCCGCGGCAA CCGCACCACC
ACGCTGCAGC TGAGCCAGCC CATCGAGCTG GGTGGCAAGC GCGCGGCCCG CGTGACGGCG
GCCGAGCGCG CGCGCGACCA GGCCGCCTCG GCGCTGCTCG CGCGGCGCTC CGAATTGCGC
GCATCGGTGA TCACGCTGTT CTTCGAGCTG CTGGCCGCGC AGGAGCGCCT GCGCCTGGCG
CAGGATTCAG TCGGGCTTGC GGAGACGGCC ACCCGCGCCG CCGCCAACCG CGTGGCGGCC
GGCAAGGTCT CGCCGCTGGA AGAAAGCCGC GCGCGCGTGG CCGAGGCCGG CATCCGCGTC
GAGCTGCTGC AGGCCGAAGG CGCGCTGCGT TCGGCGCGCC AGCAATTGGC CGCGCTCTGG
GGCAACCCGA ACCCGCGATT CACGCAGGCG GACGGCGCGC TCGACCGGCT GCCGGCCGAT
GCTGCTGCGG CGGATGTGGA GGGCCGGTTC TCCGCGGCGC CGGTGTTGCG GCAGGCGCGG
CTCGAGGTGG AGCGGCGGCA GGCGCTGTCG GACCTGGAGC AGGCCCGGCG CGTGCCCGAC
GTCACGGTGT CGCTGGGCGC CAAGCGCGTG CCGGCCGATG AGGGCATGGG CAGCGGCAGC
AGCCGCAACC AGGTCGTGGT GGGCCTGTCG GTGCCGCTGC CGATCTTCGA CACCAACCGC
GGCAATGTGG CCGAGGCGCT GAGCCGCGAA GAGAAGGCGC GCGACGAGCT CGCCGCGGCC
GAGCTGCAAC TGGGCGCCGA CGCGGCGCGG GCCACCGAGC GCCTGCGCTC GGCGCGCGCC
ACTGCCCTGA CGCTGCAGCG CGATGCGCTG CCCGGCGCCG AAGCCGCCTA CAAGGCCGCC
GCCAGGGGCT TCGAGCTCGG CAAGTTCAGC TTTCTAGAAG CGCTCGATGC GCAGCGCACG
CTGTTCCAGG TGCGCAACCA GCACCTGCTG GCCGTGGCCG AGGCGCACCG CGCGGCCGCC
GAGCTCGACC GGCTGCTCGG CATCGACGCC GATGAAGAAA CCCCTGATGC GGCACCCGCC
GTGCGCTGA
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| Protein sequence | MRTLFVPLAV MALAVPPAFS QPAAGSNPSP IRHTAAATAE PAGPLDLRSA LALALRFNPG
LSSASREREA GDAAVLQAGA WPNPVFDAQV EDLRRGNRTT TLQLSQPIEL GGKRAARVTA
AERARDQAAS ALLARRSELR ASVITLFFEL LAAQERLRLA QDSVGLAETA TRAAANRVAA
GKVSPLEESR ARVAEAGIRV ELLQAEGALR SARQQLAALW GNPNPRFTQA DGALDRLPAD
AAAADVEGRF SAAPVLRQAR LEVERRQALS DLEQARRVPD VTVSLGAKRV PADEGMGSGS
SRNQVVVGLS VPLPIFDTNR GNVAEALSRE EKARDELAAA ELQLGADAAR ATERLRSARA
TALTLQRDAL PGAEAAYKAA ARGFELGKFS FLEALDAQRT LFQVRNQHLL AVAEAHRAAA
ELDRLLGIDA DEETPDAAPA VR
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