Gene Vapar_3518 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3518 
Symbol 
ID7972144 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp3709386 
End bp3709757 
Gene Length372 bp 
Protein Length123 aa 
Translation table11 
GC content65% 
IMG OID644794103 
Productheat shock protein Hsp20 
Protein accessionYP_002945401 
Protein GI239816491 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0071] Molecular chaperone (small heat shock protein) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTTTCG CACCCACCCT TCGCACCGCC CGCTTTGCAC CCCGTTCGTA CGACCGCGCC 
TTCGAGCGCT TCGTCAACGA GGCCTTCGCC GGCACGCGCC CCTCGCCGCT CGTCGAGCAG
GACGACAAGA GCTGGACGCT TTCCGTCGAC GTGCCGGGCC TCTCGCGCGA AGACCTCGCC
ATCGGCATCG AAGGCGCCGT GGTCCGCATC GACAGCAAGG CAGAAGCCAA GCGCCAGTTC
AAGGCAGCCT ACGAATTGCC GCTGGACATC GACGTGTCCT CGAGCGAAGC CAAGCTCGAG
AACGGCGTGC TCACGCTGAA GCTGGGCAAG CTGGTGCCGG TGAGCCAGGT TTCGCAGCTG
CAGATCAACT GA
 
Protein sequence
MFFAPTLRTA RFAPRSYDRA FERFVNEAFA GTRPSPLVEQ DDKSWTLSVD VPGLSREDLA 
IGIEGAVVRI DSKAEAKRQF KAAYELPLDI DVSSSEAKLE NGVLTLKLGK LVPVSQVSQL
QIN