Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3406 |
Symbol | |
ID | 7972517 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 3592436 |
End bp | 3595171 |
Gene Length | 2736 bp |
Protein Length | 911 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644793990 |
Product | protein of unknown function DUF404 |
Protein accession | YP_002945289 |
Protein GI | 239816379 |
COG category | [S] Function unknown |
COG ID | [COG2308] Uncharacterized conserved protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGAACCCC TGAACGAATC CCTGTTCGAT GCCCAGGCGC TGGAATTTCC AGCCGCCCTG GCGTCGGCGC TCGCGCCGGC CGCCCTGCCC GGCCACTTCG ACGAACTGCG CGGGCAGGCC ACGCCCGCGG TGCCCGCGCG GCCGGCCGCA GGGGCAGCGC CATTGGCGCC GATGCCGCCC ATGCTCTACG ACGCTGCGGC GCAGCCGCCG GGTCCGTCGC AGGCTCAATC ACAGACACAA ACTCAAACCC AGGTCCTTCA GCCCGCCCCC GGCGACACCC CGCCCCTCAC GCCCGCCTGG AACGCCTTCT TCGAGCAGCT CGGCCCGGGC GGATTCAACG ACCTGCCACG GCGCGCGGTC AGCCTCGAGC GGCAGATCCG GGACAACGGC GTCACCTACA ACGTCTACGC CGACGCCGAC GGGCCGCAGC GGCCCTGGTC GCTCGACCTG TTCCCGCTGA TCGTCTCGCC CGAGAGCTGG GCCCAGATCG AGACCGGCGT GCTGCAGCGC ACGCGCGTGC TCGACCGCGT CATGGCCGAT GTCTACGGCC CGCAGCAGCT GCTGGCCGAA GGCCTGCTGC CGGCGGCGCT GGTGCACGGC CATCCCGGCT ACCTGCGCGC GATGCACGGC GTTAAGCCGC CGGGCGACAC ATGGCTGCAC ATCGCGGCCT TCGACCTTGC CCGCGGGCCC GACGGCAACT GGTGGGTGGT GTCGCAGCGC ACCCAGGCGC CCTCGGGCCT GGGCTACCTG CTCGAGAACC GGCTGGCCAT CACGCGCCAG TTTCCGCAGG CCTTCGAGGC CCTGCAGGTG CAGCGCCTGG CCGCCACCTA CAGCGCCATG ATGGACGGCC TGCAGCGCAT GTGCCCGGCC GGCGTGCCGC CGCACATCGC GCTGCTGACG CCCGGCCCCT ACAACGAGAC CTACTTCGAG CATGCGTACC TCGCGCGCTA CCTGGGCCTG ACGCTGGTCG AGGGCAGCGA CCTCACGGTG CGCGACCAGC GCCTCTACCT CAAGACCCTG CAGGGGCTGC GGCCGGTGCA CGGCCTCATC AAGCGGCTGG ACGACCAGTT CCTCGACCCG CTCGAGCTGC GCCCCGATTC CACGCTGGGC GTGCCGGGCC TGCTGCAGGC GATTCGCGCC GGCAATGTGC TGGTGGCCAA CATGCCGGGC TCGGCCTTCC TCGAATCGCC CGCGCTGCTG GGCTTCCTGC CCGGGCTGGC GCGCCGCCTC ATCGGCGAAA AGCTCAAGCT GCCGGCGCTG CCGACCTGGT GGTGCGGCGA GCGCGCCGCG CTCGAGGCGG TGCTGCCGCA GCTGGGCGAT TGCGCCATCA AGCCCACCTA TCCCGGGTCG GACGGACAGA CCAGCTTCGA CGCGGTGCTC GGCAGCAAGC TGGGCCGGCG CGAGCTCGAC GAATGGGCCG GCCGCATCGT GCGCGAGGGC GAGGCCCACA CGGTCCAGAG CTACCTGCCG CTGTCGCAGA TGCCCACCTG GGCCAACGAC ATGGGCCCCG GCCACATCGC GCCGCGCGCG ATGCTGCTGC GCGTCTTCGC GGTGAGCGAC GGGCCGCAGT CCTGGCGCGT GCTGCCGGGC GGGCTGGCGC GGCTGGCGGG CCGCGATGCG CAGATCGCCT CCATGCAGCG CGGCGGCAGC AGCGCCGACG TGTGGGTGCA GACGCACGGC GAGGTCGACC GCACCACGCT GCTGCAGCCA CATGCCACGC CGGCCTCGCT CGCGCGGCAC CGCGCGCCCG TGACCAGCCG CGCGGCCGAG AACATGTTCT GGCTCGGCCG CTACACCGAG CGCGCCGAAA ACGCCGTGCG CCTCGCGCGC CTCACGCTCA ACCTGCTGGG CAGCGAAGAC CAGTCGTCGC GCCCGCTGCT CGACTGGCTG CACCGCATGG CGCTGCGCAA TGCGCTGGTG CCGGCCGAGG CGCCGAGCGC GCCGCAGTCG CGCCGCGTGT TCGAACGCGC GCTGATCGCC GAGCTCGGCG ACGTGGCGCG CGGCGGCAGC GTGGGCTTCA GCCTGCGCTG CATCCGGCAG GCCGCCGCCG CCGTGCGCGA ACGGCTCTCG CAGGACACCT GGAACCAGAT CGTGCGCGCC GAGGCCGACT TTTTGCGGCG CGCGGCCGAG CAGGCCGGCG AAGGCAGCTT TGCCACCGGC GCCGCGCTGC GCGCGCTCGA ATCCGCCAGC ACCGCGCTCG CCGCCATGAC CGGCGCGCAG ACCGACCGCA TGACGCGCGA CGACGCCTGG CGCCTGCTGT CGATCGGCCG CCACATCGAG CGGCTGGGCT TTCTTGCGAG CGCGCTGGAG GCCGGCTTCG AGAACGGCGC CGTGCACGAA GTGAGCGGCT TCGAAGCCAT GGTGGCGCTG TTCGACAGCA CCATCACCTT CCACGCCCGC TACCAGCAGC GGCGCGACGT GGCCACGCTG GTCGACCTGC TGGTGCTCGA TGCCGAGAAC CCGCGCTCGC TGGCATGGGT CACGCAGACG CTGCGCGGGC GCATCGCGCG CCTGGCCGGC AGCGCGCCCG GCAAGCTCAC CGCGCTGTCG TACGAGCTGC CCGACCCCGC CGCCTGGACG CTCGAGCATC TCTGCGCGGC CGGCGCCGAG GCCGACTACC CGGCGCTGGT GCAGCTTCTG GCCAGTTGCG AGACGGCGGC CTACCATGTG TCCGACGCCA TCGGCACGCG CTATTTCACG CTCACCTCGG AATCGCTGCG CTCGGTCGGC GCCTGA
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Protein sequence | MEPLNESLFD AQALEFPAAL ASALAPAALP GHFDELRGQA TPAVPARPAA GAAPLAPMPP MLYDAAAQPP GPSQAQSQTQ TQTQVLQPAP GDTPPLTPAW NAFFEQLGPG GFNDLPRRAV SLERQIRDNG VTYNVYADAD GPQRPWSLDL FPLIVSPESW AQIETGVLQR TRVLDRVMAD VYGPQQLLAE GLLPAALVHG HPGYLRAMHG VKPPGDTWLH IAAFDLARGP DGNWWVVSQR TQAPSGLGYL LENRLAITRQ FPQAFEALQV QRLAATYSAM MDGLQRMCPA GVPPHIALLT PGPYNETYFE HAYLARYLGL TLVEGSDLTV RDQRLYLKTL QGLRPVHGLI KRLDDQFLDP LELRPDSTLG VPGLLQAIRA GNVLVANMPG SAFLESPALL GFLPGLARRL IGEKLKLPAL PTWWCGERAA LEAVLPQLGD CAIKPTYPGS DGQTSFDAVL GSKLGRRELD EWAGRIVREG EAHTVQSYLP LSQMPTWAND MGPGHIAPRA MLLRVFAVSD GPQSWRVLPG GLARLAGRDA QIASMQRGGS SADVWVQTHG EVDRTTLLQP HATPASLARH RAPVTSRAAE NMFWLGRYTE RAENAVRLAR LTLNLLGSED QSSRPLLDWL HRMALRNALV PAEAPSAPQS RRVFERALIA ELGDVARGGS VGFSLRCIRQ AAAAVRERLS QDTWNQIVRA EADFLRRAAE QAGEGSFATG AALRALESAS TALAAMTGAQ TDRMTRDDAW RLLSIGRHIE RLGFLASALE AGFENGAVHE VSGFEAMVAL FDSTITFHAR YQQRRDVATL VDLLVLDAEN PRSLAWVTQT LRGRIARLAG SAPGKLTALS YELPDPAAWT LEHLCAAGAE ADYPALVQLL ASCETAAYHV SDAIGTRYFT LTSESLRSVG A
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