Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3350 |
Symbol | |
ID | 7970588 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 3529823 |
End bp | 3530647 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644793935 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_002945234 |
Protein GI | 239816324 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0395] ABC-type sugar transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.610127 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCGGC CTTTGCTCCT GGTGGTGGCG CACTACGCGA TGCTTGTTGC GCTGGGCCTG CTGTGCGTGG CGCCCATTGC GCTGATCTTC ACGACCAGCC TGCGCCAACA GGTGCATATC TTCGCGGAGC CGCTGAATTT CATCTTCATG CCCACGCTGG AGAACTACCG CGCGGTGCTC ACTGAAGACA ACCTGGGGCG CTATCTGGGC AACAGTCTGT TCGTCGGCGT GATCGCCACA GCCATTACCC TGGTGCTGGG CTGCATGGCT GCCTATGGGC TGGCGCGCTT TCGCTTTCCG GGCCGTTCGG CAGTGGGCTA CACCACTTTG CTGCTGCGTA CCGTGCCTCT GGCCGTGCTC GCGATTCCGG TGTTCATGAT CTGGAGCCAA TGGCAACTGG TGAACAGCCT GTGGGGACTG ATCCTTCTGT ACGTCGCGGT GAATCTACCG TTCACCATCT GGCTGCTCTA TGGCTTCGTA CTGCAGGTGC CGGTCGAACT GGAGGAGGCC GCGGCGATCG ACGGCTGTGG GCCGGTGCGG GTGTTCACCA AGGTGCTGCT GCCGCTGATG GGGCCGGGTC TCGCGGCGGC GTCCATCTTC ACCTTCCGCA TCGCGTGGAA CGAATTCATC CTCGCGCTGG TGCTGACCGA CCGGCAGACA CGCACGCTCC CAGTGGCTGC GTCGCTGTTC ATCACCGACA TGGGCGTGGA TTGGGGCAAG GTGATGGCGA TGGGCAGCCT GATCGCCATC CCGCCTCTGA TCTTCACCTT CGTAGCAGCG CGGCAGATCA TCACGGGGAT GACCGCGGGG GCGGTAAAAG GCTGA
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Protein sequence | MKRPLLLVVA HYAMLVALGL LCVAPIALIF TTSLRQQVHI FAEPLNFIFM PTLENYRAVL TEDNLGRYLG NSLFVGVIAT AITLVLGCMA AYGLARFRFP GRSAVGYTTL LLRTVPLAVL AIPVFMIWSQ WQLVNSLWGL ILLYVAVNLP FTIWLLYGFV LQVPVELEEA AAIDGCGPVR VFTKVLLPLM GPGLAAASIF TFRIAWNEFI LALVLTDRQT RTLPVAASLF ITDMGVDWGK VMAMGSLIAI PPLIFTFVAA RQIITGMTAG AVKG
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