Gene Vapar_3074 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3074 
Symbol 
ID7973794 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3230037 
End bp3230618 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content70% 
IMG OID644793658 
Productprotein of unknown function DUF447 
Protein accessionYP_002944959 
Protein GI239816049 
COG category[S] Function unknown 
COG ID[COG2457] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGACC AGATCTTCGA AGCCGTGGTG ACCACCGTGG CCCCCGGCGG CAAGCCGCAC 
GTGGCTCCGA TGGGCATCCG CTACCAGGAG GGCGGCATCC TGCTGATGCC GTTCAAGCCC 
TCGACCACGC ACGACAACAT CGTGGCCACC GGCCATGCGG TGCTCAACAT CGTCTGCGAC 
ACGCGCGTGT TCGCGGGCTG CGTCACGGGC CGCAAGCTGT GGCCCACGCT GCCGGCCGAG 
CGCATCGAAG GCGTGCGGCT GGCCGCTGCG CTGCGCCACG TCGAGCTCGA ACTGGCCGAG 
CAGCGCGACG ACGTGCAGCG GCCGGTATTG CGCATGGTGG CCGTGCACGA GGCCACGCAT 
GCGCCGTTTG CCGGCTTCAA CCGCGCGCAG GCCGCGGTGA TCGAAGGGGC CGTGCTGGTG 
AGCCGCCTGC ACATGCTCCC CCCCGAGAAA GTGGAAACCG AAATGACCTA CCTGCAGATC 
GCGATCGACA AGACCGCCGG CCCCGAGGAA CGCGAGGCCT GGGAGTGGCT GCGCGCCGCG 
GTCGCGCAGC ACCGCGCCGC CGACCGGGAG CGCACATCAT GA
 
Protein sequence
MNDQIFEAVV TTVAPGGKPH VAPMGIRYQE GGILLMPFKP STTHDNIVAT GHAVLNIVCD 
TRVFAGCVTG RKLWPTLPAE RIEGVRLAAA LRHVELELAE QRDDVQRPVL RMVAVHEATH 
APFAGFNRAQ AAVIEGAVLV SRLHMLPPEK VETEMTYLQI AIDKTAGPEE REAWEWLRAA 
VAQHRAADRE RTS