Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3030 |
Symbol | |
ID | 7973750 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3188271 |
End bp | 3189203 |
Gene Length | 933 bp |
Protein Length | 310 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644793614 |
Product | CbbX protein |
Protein accession | YP_002944915 |
Protein GI | 239816005 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0464] ATPases of the AAA+ class |
TIGRFAM ID | [TIGR02880] probable Rubsico expression protein CbbX |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00687874 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACGCCA CCGAAACCCC CGCCACCACG GCCGCTGTCG CGACCGCGCC GAGGCAGCTC TTCGAGTCCT CGGGCGTGAA GGCGCTGCTC GACCAGCTCG ACGCCGAGCT GATCGGGCTG GCGCCGGTCA AGGGCCGCAT CCGCGACATC GCGGCGCTGC TCTTGATCGA CAAGCTGCGC CAGGAACAGG GGCTGCAGTC GCAGCCGCCT TCGCTGCACA TGTCGTTCAC GGGCAACCCG GGCACCGGCA AGACCACGGT GGCGATGCGG ATGGCCGAGG TGCTCAAGCA ACTGGGCTAC GTGCGCAAGG GCCACCTGGT GGCGGTGACG CGCGACGACC TGGTGGGCCA GTTCATCGGC CACACGGCGC CCAAGACCAA GGAAGTGATC AAGAAGGCGA TGGGCGGCGT GCTGTTCATC GACGAGGCCT ACTACCTCTA CCGGCCCGAG AACGAGCGCG ACTACGGGCA GGAGGCCATC GAAATCTTGC TGCAGGTGAT GGAGAACCAG CGCGACGACC TGGTGGTGAT TCTTGCGGGC TACAAGGACC GCATGGAGAC CTTCTTCGGC AGCAACCCGG GCATGGCCTC GCGCATTGCG CACCACATCG ACTTTCCGGA CTACAGCGAG GCCGAGCTGA TGCAGATCGC GCAGCTCATG CTGGGGCGGC TGAACTACAG CTTCGACGAC GGCGCGGCCT CCACCTTCTC GCGCTACGTG AGCCTGCGCC GGCAGCAGCC GCACTTTGCC AATGCGCGCT CGATCCGCAA CGCGCTCGAC CGCATCCGGC TGCGCCACGC CACGCGCCTG TTCGGCAGCG ACGCGGCGCT GACGCGCGAG CAGCTCTGCA CGCTGCAGGC GCAGGACATC CTGGCCAGCC GCGTCTTCCA TCCGGCGGCG GATGCCGCGC AGGCCGAAGG AGAAAAGAGA TGA
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Protein sequence | MDATETPATT AAVATAPRQL FESSGVKALL DQLDAELIGL APVKGRIRDI AALLLIDKLR QEQGLQSQPP SLHMSFTGNP GTGKTTVAMR MAEVLKQLGY VRKGHLVAVT RDDLVGQFIG HTAPKTKEVI KKAMGGVLFI DEAYYLYRPE NERDYGQEAI EILLQVMENQ RDDLVVILAG YKDRMETFFG SNPGMASRIA HHIDFPDYSE AELMQIAQLM LGRLNYSFDD GAASTFSRYV SLRRQQPHFA NARSIRNALD RIRLRHATRL FGSDAALTRE QLCTLQAQDI LASRVFHPAA DAAQAEGEKR
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