| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3003 |
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| Symbol | |
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| ID | 7973723 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3158851 |
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| End bp | 3160401 |
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| Gene Length | 1551 bp |
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| Protein Length | 516 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644793588 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_002944889 |
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| Protein GI | 239815979 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCAAT CTTCTTCCTC CCTGCGATGG GCATCGGCAC TGCTGGGCCT GGCCGCACTG
GCTGCATCGG GCACGGCACT GGCCGCGAAA GACGTGGTGC TGTCGATCGG CTACCAGCCC
GAAACGCTGG ACCCGTACAA CACCAACACC ACCATCACCA CGGCCGTGAC CAAGACCTTC
TATGAAGGCC TGTTCCAGTT CGACAAGGAC CTGAAGGTGC AGAACGTGCT GGCCGAGAGC
TACGACGTGT CGAAGGACGG CTTGGTCTAC ACCATCAAGC TGCGCAGCGG CGTCAAGTTC
CACGACGGCA CCGACTTCAA CGCAGAGGCC GTGAAGTTCG TGCTCGACCG TGTGCTCAAC
CAGGACAACA AGCTGCTGCG CTACAACCAG TTCAACCGCG TGAGCAAGGT CGAGGCGCTG
AACCCCACCA CCGTGCGCAT CACGCTCAAG GAGCCCTTCG GCCCCTTCAT CAACTCGCTG
GCCCATGCCT CGGCCGCGAT GATCTCGCCC ACCGCGCTCA AGAAATGGGG CAACAAGGAC
ATCGCTTTCC ACCCCGTGGG CACCGGCCCC TTCGAATTCG TCGAGTGGAA GCAGACCGAA
GCCGTCAAGG CCAAGAAGTT CGACGGCTAC TGGAAGAAGG GCTATCCGAA GATCGACACG
GTCTCGTGGA AGCCGGTGCT CGAGAACAAC ACGCGCGCCG CGATGCTGCA GACCGGCGAA
GCCGACTTCG CCTATCCCAT TCCCTATGAG CAGGCCGACC TGCTGAAGAA GAGCGAGAAG
CTCGAAGTGG TGGCGACGCC GTCGATCATC ACGCGCTTCC TGGCATTCAA CATGCTGCAG
AAGCCCTACG ACAACCCGAA GGTGCGCGAA GCCATCGGCT ACGCCATCAA CAAGGAAGCG
CTGGCCAAGG TCGCGTTCGG CGGCTATGCC TTCCCCGCGC AAGGCATCGT GCCGCAGGGC
GTCAAGTACG CCGAGAAGAT GGCGCCCATT CCCTACGACC TGAAGAAGGC CAAGGAGCTG
ATGAAGGAAG CCGGCTACCC CGATGGCTTC GAGTCGGTGC TGTGGAGCGC CTACAACAAC
ACGACCAGCC AGAAGACCAT CCAGTTCGTG CAGCAGCAGC TCGCGCAGAT CGGCATCAAG
CTGCAGGTGC AGGCGCTCGA AGTGGGCCAG CGCACCGAGC AGGTGGATGC ATGGCCCGAT
CCGAAGACGG CGAAGGTCCG CATGTACTAC ACGGGCTGGT CGTCGTCGAC CGGTGAAGCC
GACTGGGGCC TGCGCCCGCT GTTCGCCTCG GAAGCCTGGG CACCCAAGCT CAACAACATG
TCGTTCTACA AGAGCGAGGT GGTGGACAAC GCGCTGGCCA AGGCGCTGGT GACGGTCGAC
GAAAAGGAAC GCACCGCGCT CTACAAGACC GCGCAGGAAG AGATCCGCAA GGACCTGCCG
CGCGTGCCGA TGGTCACGGA GAAGAACCTG TCGGCGCATG CCAAGCGCTT GTCGGGTGTG
TTCGTGATGC CTGACGGCAA CATCAACATC GACGCCATCG CGGTCAATTG A
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| Protein sequence | MKQSSSSLRW ASALLGLAAL AASGTALAAK DVVLSIGYQP ETLDPYNTNT TITTAVTKTF
YEGLFQFDKD LKVQNVLAES YDVSKDGLVY TIKLRSGVKF HDGTDFNAEA VKFVLDRVLN
QDNKLLRYNQ FNRVSKVEAL NPTTVRITLK EPFGPFINSL AHASAAMISP TALKKWGNKD
IAFHPVGTGP FEFVEWKQTE AVKAKKFDGY WKKGYPKIDT VSWKPVLENN TRAAMLQTGE
ADFAYPIPYE QADLLKKSEK LEVVATPSII TRFLAFNMLQ KPYDNPKVRE AIGYAINKEA
LAKVAFGGYA FPAQGIVPQG VKYAEKMAPI PYDLKKAKEL MKEAGYPDGF ESVLWSAYNN
TTSQKTIQFV QQQLAQIGIK LQVQALEVGQ RTEQVDAWPD PKTAKVRMYY TGWSSSTGEA
DWGLRPLFAS EAWAPKLNNM SFYKSEVVDN ALAKALVTVD EKERTALYKT AQEEIRKDLP
RVPMVTEKNL SAHAKRLSGV FVMPDGNINI DAIAVN
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