| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2928 |
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| Symbol | |
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| ID | 7972204 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3079409 |
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| End bp | 3080737 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644793513 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_002944814 |
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| Protein GI | 239815904 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0634587 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAGCA CAACCACCAC GACCACTGCG GCCACCACCA CGCAGTACTA CCGCTTCAAG
CCCTGGAACA TCGGGCGCTT CCTGATCTGG TCGCTGTTCG CGATCGTGCT GATCGTCTCG
CCGCTGCTGT TCAAGAGCAG CCTGGCGCTC ACCATGCTCT CGCAGATGGG CTACCTGATC
ATCATCTGCC TGAGCTACAA CATCCTGCTG GGGCAGGGCG GCATGCTGAG CTTCGGGCAT
GCCGTGTATG TCGGGCTCGG TTCCTTCCTT GCGATCCATG CGATGAACAT GGGCGAGAAG
GGCGGGCTGC AGATTCCGCT GGTGGCCATT CCGCTGGTGG GGGGCCTGGC CGGCATGTTC
TTTGCCATCC TGCTGGGCTT CGTCACGACG AAGAAGTCGG GCACCACCTT CGCGATGATC
ACGCTGGGCA TCGGCGAGCT GGTGGCCTCC ATGGCGCTGA TGTTCCCGAG CTTCTTCGGC
GGCGAGGGCG GCATCACCAC CAACCGCGTG TACGGGCCGA GCTTCTTCGG CTTCAACTTC
GGACCACAGA TCCAGGTGTA CTACCTGATC GCCGCCTACT GTTTCGTCTG CACCGCGCTC
ATGTATGCCT TCACCGGCAC GCCGCTCGGG CGCATGCTGA ATGCGGTGCG CGACAACCCG
GAGCGCGTGG AGTTCATCGG CTACAACACG CAGCGCGTGC GCTACTTCGC CTTCATCATC
GCGGGCTTCT TCGCGGGCAT CGGCGGCGGG CTGGCGTCGA TCAACTTCGA GATCGTGAAT
GCGGCCGACA GCCTGAGCGC CATCCGCTCG GGCGGCTACC TGCTGTTCAC CTTCCTGGGC
GGCGCGGTGT TCTTCTTCGG GCCGATCATC GGCGCGGTGC TGCTGGTGTT CGCCTCGATC
CTGCTGTCGG AGCTCTCCAA GGCCTGGCAG CTCTACTTCG GCCTCGTGTT CGTGTTCATG
GTGATGTTCG CGCCCGGCGG CATCGCCAGC CTGGTGATGA TGAACCTGCG GGTTGCCAGG
TTCGGCAAGT TCGGCCGCTT CTGGCTGCTG TACGTCGCGC TCGCGGTGGC ACTGGTGCCG
GTGGTGGTGG GCGCTGCCGC GCTGATCGAG ATGATCTATC ACATCCAGCT CAACGCAGCG
CTCGGACCCA ACCTGCACTA CTTCGGCGTG GCGATCGATA CATCCTCTGC GGCAAGCTGG
CTCGGCGCCG CCGCGATCCT GGCCGTGGGC CTGGCTGCGC TGGAGGTGGC GCGCCGGCGC
TTCGTGCGTG TCTGGGGCCA GGCGCAGGAA GAGATCGAAG CAGAAATCAA GCGCCGGGAG
GCTGCGTAA
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| Protein sequence | MTSTTTTTTA ATTTQYYRFK PWNIGRFLIW SLFAIVLIVS PLLFKSSLAL TMLSQMGYLI
IICLSYNILL GQGGMLSFGH AVYVGLGSFL AIHAMNMGEK GGLQIPLVAI PLVGGLAGMF
FAILLGFVTT KKSGTTFAMI TLGIGELVAS MALMFPSFFG GEGGITTNRV YGPSFFGFNF
GPQIQVYYLI AAYCFVCTAL MYAFTGTPLG RMLNAVRDNP ERVEFIGYNT QRVRYFAFII
AGFFAGIGGG LASINFEIVN AADSLSAIRS GGYLLFTFLG GAVFFFGPII GAVLLVFASI
LLSELSKAWQ LYFGLVFVFM VMFAPGGIAS LVMMNLRVAR FGKFGRFWLL YVALAVALVP
VVVGAAALIE MIYHIQLNAA LGPNLHYFGV AIDTSSAASW LGAAAILAVG LAALEVARRR
FVRVWGQAQE EIEAEIKRRE AA
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