| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2835 |
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| Symbol | |
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| ID | 7970724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2979443 |
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| End bp | 2982568 |
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| Gene Length | 3126 bp |
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| Protein Length | 1041 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644793420 |
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| Product | putative type 4 fimbrial biogenesis PilY1-related protein signal peptide |
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| Protein accession | YP_002944721 |
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| Protein GI | 239815811 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.341777 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAGA ACTTCTTCCG GTCGCTCTGC GCCGCTGCGA TGCTGATGCT CGGCCTGGGC
TCGGCCCAGG CGGAAGACAT CGATCTTTTC GTCGGCTACA ACCAGACCAC CACGGAGGCG
CCGAATGTGC TGTTCGTGGT GGACAACACG GCCAACTGGA CCCCGCTCTT CACCGCTGAA
ATGAACGCGC TGGCGAGCGC CTTCGAAAGC CTGTCCTCGG GCAAGTTCAA GGTCGGGGTG
ATGATGTTCA CCGAAACAGG AGGAGGCAAT TCGAATGTCG ACGGCGCCTA TCTGCGTGCT
GGCATCCGCC TGATGGACGA TGCCAGCAAG CCCAAGTACG GCGCGCTGAT TCGAAACCTC
GACGTGGGTG CCGACAAGTC CAACGGCGGC AAGGCCGGCA AGATGATGGC CGAGGTCTAC
CGCTATCTGG CGGGCCAGGC TCCATTGGCC GGCAACAACA AGCTCAAGGC CGATTACAGG
GGCAATGTCT CCACTTACGG CCAGGGCAAA AACGAATCCG CTGGATCTGT CGCATCCAGG
GCAATCTGGG CGCTCCCTGG CAATCCGCTG AATGCAATCG GCAGCACCAC CTACAACGCC
CCGAACACCG CGAACTGCAT CGGCACCTAC GTCATCTACA TCAGCAATGG TGCCGCACAG
GACAACAACA GCGACACCAC GACTTCCACC GATGCCCTGC GCGCCGCGGG CGGCACGACC
ACCGCCATTA CGCTGAACCC GAGCGGTTCC CAGGACAACG TGGCCGACGA ATGGGCCAGG
TTCCTGCAAA GCAGCATGGG CGTGAAGGTC TACACCGTCG AAGCCGCGAC GGCCAGCGGC
GGCCAGGGGC CGGGCTGGAC TGCATTGCTC AAGAGCATGT CGGAGCAAAG CAAGGGCGAG
TACTACGACA TTTCCACCAA TCCCAACCTG GGCAAGGCGC TGAGCGATGC GCTCGACGAT
ATCTTCAGCA AGATCCAGTC GGTCAACAGC GTGTTCTCGT CGGTGAGCCT GCCCGTGAGC
GTGAACACGC AGGGCACCTA CCTGAACCAG GTGTTCGTGG GCATGTTCCG CCCCGACGAT
TCCGCCTATC CGCGCTGGAA CGGCAATCTC AAGCAATACA AGCTGGGCGT GGATGGCAGC
AACCAGCTGA TCCTGCAGGA CGCCTCGGGC GCCAACGCCA TCAACAACCA GACCGGCTTC
ATCGCACCTT GCGCGCGGAG TTTCTGGACG CCGACCAGTC GCAACACCTA CTGGAGCTTC
AACCCCTCTG GCGACTGCAT CAGCAGCGAC ACGACCATCG ACCTTCGCGC TTCGGACAGC
CCGGACGGCA ACGTGGTCGA AAAAGGCGCG CAAGCCTACA TGCTGCGCCA AGTGCTCACG
GCCGACCGCA ACGTCATGAC CTGCGCGCCG GGCGCCTGCT CGGCCTTGAC CACCTTCGCC
GATGGCAATG CGGGCATCAC GTCGACGGCC CTTGGGGCGC AAACCACCAC CGAACGGACC
GCGTTGATCA ACTGGCTCCG GGGCCTGGAC AACAAGGGCG ACGAGCGCAA GGACACCACC
GGAAATCCCC TGACCTCCAC CACCGCCATG CGCCCCTCGG TGCACGGCGA CGTGGTGCAT
TCGAGGCCGG TGGCCATCAA CTACGGCAGC GATGACCTGG CGAACGCGCA GGTGGTGGTG
TTCTACGGCG CCAACGATGG CGTGCTGCGC GCCGTCAACG GCAACCAGGC CACCTCGATC
GGGTCGGCAG CGCCCGGCAG CGAGCTGTGG TCCTTCGTGC CGCCGGAGTT CTACGGCAGC
ATCAAGCGGC TGTACGACAA CACCACGCGC ATCAACTTTC CGGGCATTCC GGTGAGCGTG
GGCGCCACCG CGCCCAAGCC TTATGGCATG GACGGCCCGA TGGCGGCCTA CCGCCAGGGC
ACGTCGGCAT GGCTCTATGC GAGCATGCGC CGCGGCGGCC GGCTGATCTA TGCGTTCGAC
GTGTCCAACC CCGCGACGCC CGTTCTCAAA TGGCGCCGCG GCTGCCCCAA CCAGGACAAC
GACACGGGCT GCGACAGCGG TGCCAACGAC ATGAGCGGCA TCGGCCAGAC CTGGTCGGCA
CCGAAGATCG TGAAGGCCAG CGGCTATGGC GCCGGCAACA CGCCCATGGT GATGTTCGGC
GGCGGCTACG ACAAGTGCGA GGACGTCGAC ACCACCACGC CCGCCAGCGC CTGCGGCTCG
GCCACCAAGG GCAAGAAGAT CTATGTGCTC GACGCCAGCA CGGGCGACGT CCTCAAGACC
TTCGACACCG TCCGCGCGGT CAGCGGGGAG GTCACCATCG TGAACGACAG CACCGGCCTC
GCCAAGTTCG CCTACGCGGC CGACCTGGGC GGCAACGTGT ACCGCATCAC CATCGGAAGC
GGCGCGCCCG CCAGCTGGAG CATGGTCAAG ATCGCCTCGC TCGGCTGCAG CGACACCGTG
ACCGCCTGCA CGCCCAACCG CAAGTTCATG TTCGGTCCCG ACGTGGTCGA GGACAACGGC
ATGTACGTGC TGCTGCTGGG CTCGGGCGAC CGCGAGAAGC CGCTGCGCTC CTACTCCGCC
GCGCTCAGCG TTTCCAACCG CTTCTACATG CTGGTCGACA AGCCCTCCGA CACCGCTTGG
CTCACCGCGG AGGCCAGCCA CTGCGACGGC AACTCGCTGC TGTGCCATAA CTCGCTCTTT
GCCATCACGG GCACCACGGC GCCGTCCGCG ACCGAGCTCG CGGCCAAGAA GGGCTGGTAC
CTCGCGCTTG CGGCCGGCGA GCAGGTGGTG ACCTCGTCGG TCACGGCCTA TGGCAACACG
ACCTTCAACA CCCACACGCC CACCGACCCG GCCGTGAGCC AGTCGTGCCG CTCCAACCTG
GGCACCGCCA ACGTCTACAA CCTGTCGTAC CTGGACGCCA CGGGGCAGAA CGGCGCGCGC
TTCCAGAACG TGATTGGCGG CGGTCTCGCG CCATCGCCCG TGGTCGGCCG GGTCATGGTG
GGCGACACCT TGCGCGACGT GGTGATCGGC GCCAATCCCG ACTCGTTCCT GAGCCCGAAG
GGCGCCACGG TCAAGGCCGC CTTCAAGCAG CCCAAGGGCC GCGTCTACTG GTTCATCCAG
AAGTAA
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| Protein sequence | MKKNFFRSLC AAAMLMLGLG SAQAEDIDLF VGYNQTTTEA PNVLFVVDNT ANWTPLFTAE
MNALASAFES LSSGKFKVGV MMFTETGGGN SNVDGAYLRA GIRLMDDASK PKYGALIRNL
DVGADKSNGG KAGKMMAEVY RYLAGQAPLA GNNKLKADYR GNVSTYGQGK NESAGSVASR
AIWALPGNPL NAIGSTTYNA PNTANCIGTY VIYISNGAAQ DNNSDTTTST DALRAAGGTT
TAITLNPSGS QDNVADEWAR FLQSSMGVKV YTVEAATASG GQGPGWTALL KSMSEQSKGE
YYDISTNPNL GKALSDALDD IFSKIQSVNS VFSSVSLPVS VNTQGTYLNQ VFVGMFRPDD
SAYPRWNGNL KQYKLGVDGS NQLILQDASG ANAINNQTGF IAPCARSFWT PTSRNTYWSF
NPSGDCISSD TTIDLRASDS PDGNVVEKGA QAYMLRQVLT ADRNVMTCAP GACSALTTFA
DGNAGITSTA LGAQTTTERT ALINWLRGLD NKGDERKDTT GNPLTSTTAM RPSVHGDVVH
SRPVAINYGS DDLANAQVVV FYGANDGVLR AVNGNQATSI GSAAPGSELW SFVPPEFYGS
IKRLYDNTTR INFPGIPVSV GATAPKPYGM DGPMAAYRQG TSAWLYASMR RGGRLIYAFD
VSNPATPVLK WRRGCPNQDN DTGCDSGAND MSGIGQTWSA PKIVKASGYG AGNTPMVMFG
GGYDKCEDVD TTTPASACGS ATKGKKIYVL DASTGDVLKT FDTVRAVSGE VTIVNDSTGL
AKFAYAADLG GNVYRITIGS GAPASWSMVK IASLGCSDTV TACTPNRKFM FGPDVVEDNG
MYVLLLGSGD REKPLRSYSA ALSVSNRFYM LVDKPSDTAW LTAEASHCDG NSLLCHNSLF
AITGTTAPSA TELAAKKGWY LALAAGEQVV TSSVTAYGNT TFNTHTPTDP AVSQSCRSNL
GTANVYNLSY LDATGQNGAR FQNVIGGGLA PSPVVGRVMV GDTLRDVVIG ANPDSFLSPK
GATVKAAFKQ PKGRVYWFIQ K
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