Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2787 |
Symbol | |
ID | 7971000 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2933626 |
End bp | 2934246 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644793373 |
Product | 2'-5' RNA ligase |
Protein accession | YP_002944674 |
Protein GI | 239815764 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1514] 2'-5' RNA ligase |
TIGRFAM ID | [TIGR02258] 2'-5' RNA ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.320306 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCGAAC AACTGCTGCT CCCAGGCATC GATCCCGCGC CGCCGCCGTT GCGCCGCCCG CGCCGCACCG TATCACCCAA GGAGCGCCTG CCGCGCTCGC TGTTCTTCGC GATCTTTCCG CGCCCCGAAG ATGCCGCGTC GATTGCCGCG CTGGCGGCCC GCCTGAAGGA CCGGCACGCG CTCAAAGGCA AGCTGACCGA GGCGCATCGC CTGCACGTCA CGCTGCATCA CCTCGGGCAT TTTCCGGCAG TGCCGCGCGA AAAGGTGCAA GCCGCCCTGC AGGCCGCGGC CGCCGTGGCG CCGCCGTCGT TCGAGGTGGT GTTCGACGAG GCCATGCGCT TCGAGCAGAG CAAGGCCTTC GTGCTGTGCG GCGGCGGCAG CGGCACCTCG GCGCTTGCGG CATTCAGGCA GCGGCTGGGC GAGGCACTGG CGGATGCGGG CTTCAAGCCC GAGCGCGGCT TCACGCCTCA CATGACGCTG GCCTACACGC CGCGCAGGAT CGAGCCGCAT CTGGTCGAGC CGGTCCGGTG GATGGCCGAC TCGTTCTCGC TGATCGAAAG CCACGTCGGC GAAGGCATCC ATGAGGTGCT GGGGCGGTGG CCTTCGGACC GGGCGGCCTG A
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Protein sequence | MPEQLLLPGI DPAPPPLRRP RRTVSPKERL PRSLFFAIFP RPEDAASIAA LAARLKDRHA LKGKLTEAHR LHVTLHHLGH FPAVPREKVQ AALQAAAAVA PPSFEVVFDE AMRFEQSKAF VLCGGGSGTS ALAAFRQRLG EALADAGFKP ERGFTPHMTL AYTPRRIEPH LVEPVRWMAD SFSLIESHVG EGIHEVLGRW PSDRAA
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