| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2778 |
|---|
| Symbol | |
|---|
| ID | 7970991 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2925664 |
|---|
| End bp | 2926572 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644793365 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002944666 |
|---|
| Protein GI | 239815756 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.23055 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAGT TCAGGCAGTT GCGTCAGTTC GTGGTGGTGG CGGAAGAGCT CAACTTCGGC
CGTGCGGCGG AGAAGCTGCA CATGTCCCAG CCGCCGCTGA GCGTGGCCAT ACGCAACCTG
GAACTGCAGG TAGGCACGCT GCTGATAGAC CGCAGCCGGC ACCATGTGCG CCTGACGCCG
GCAGGCAAGG TATTCCTGAA GGATGCGCAG CGCCTGCTGA CACAGGCCCA TGCGGCCACG
GAACGCGCGC GGCGTGCCGC CCAGGGCGCG GAAGGCTCGC TCAGCCTGTC CTTCGTGCCG
AGTGCCGCGC TCGATCTTCT GCCGGACATC TTCAAGCGGT TCCAGCGCGA CTATCCGACG
GTCCACCTGC ATGTGACCGC GGAGACCACC ACCCGGCAGG TGGAGGCGCT GCGGCGCGCC
GAGGTCGACC TGGCCCTGGT GGTCGGCCCG CTGCAGGACG TGCCGGACCT TGCCTTTGTC
GATCTCCAGG CACAGGGTTT CGTCATTGCC GTGCCTCGCA GCCATGCCCT CGCAAAACAG
CGCTCCGTGA AGATCAAGGC CCTTGCGGCA GAGTCCTTCA TCGCTTTTCC AGCGGCCGAG
GGCGCGGGCT TCGTGGCGGC GCTGCTCAGC GCCTGCAAGG CCGCGGGCTT CTCGCCCAGG
GTCGTCCAGG AAGCCTCCCA GATGCAGGCC GTGCTGACAC TGGTCGCCGG CGGCCTGGGC
ATCGCCCTGG TGCCGGCCTC CATGCGCATG CTGGCCATGA AGGACGTGGC TTTCCTTGAC
GTGGCCGAAA CGCGGGCACC ACCCACCTAC CAGCTGGCTT TCGCCTACAG CCGCACCAAC
GACAACCCAG TCATCCATTC CTTCCTGGCA GTGGCAGGCA AGGCCGTGGC GCACGCGCGC
AGCACCTGA
|
|---|
| Protein sequence | MIEFRQLRQF VVVAEELNFG RAAEKLHMSQ PPLSVAIRNL ELQVGTLLID RSRHHVRLTP
AGKVFLKDAQ RLLTQAHAAT ERARRAAQGA EGSLSLSFVP SAALDLLPDI FKRFQRDYPT
VHLHVTAETT TRQVEALRRA EVDLALVVGP LQDVPDLAFV DLQAQGFVIA VPRSHALAKQ
RSVKIKALAA ESFIAFPAAE GAGFVAALLS ACKAAGFSPR VVQEASQMQA VLTLVAGGLG
IALVPASMRM LAMKDVAFLD VAETRAPPTY QLAFAYSRTN DNPVIHSFLA VAGKAVAHAR
ST
|
|---|
| |