Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2744 |
Symbol | |
ID | 7972345 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2892165 |
End bp | 2893799 |
Gene Length | 1635 bp |
Protein Length | 544 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644793331 |
Product | ABC transporter related |
Protein accession | YP_002944632 |
Protein GI | 239815722 |
COG category | [R] General function prediction only |
COG ID | [COG4172] ABC-type uncharacterized transport system, duplicated ATPase component |
TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGCCAAA TCAAGCATCT CCAGCCGCTG CTGGACGTGA AAGAGCTGCG CGTGGCCTTC GGCGGCAAGG AGGTGGTGCA CGGCATCGAC TTCCGCATTG CCGCGGGCGA GAAGCTCGCG CTGGTCGGCG AATCGGGTTC GGGCAAGACC GTGACGGCGC TGTCGCTGCT GCGCCTGGCG CAGAACGCCG ACGTGGCCGG CGCCGCGACC TTGTTCGGCT CCGCAGATGC GCCAAGCGGG CGCGACCTGC TCTCGATTCC GGAGCGTGAG CTGCGCGGCA TCCGCGGCAA GGAGATCGCG ATGATCTTCC AGGAGCCGAT GACCGCCCTC AACGCGCTCT ACACCGTGGG CGACCAGATC GCCGAGGTGC TCGAACTGCA CGAGGGCCTG TCGGCGCGCG CGGCCCAGGC GGCCGCCGTG CAGCTGCTGG CCGACACCGG CATTCCGGAG CCGGCGCGGC GGGCGAGGGC GTTTCCGCAC CAGCTCTCGG GCGGCCAGCG CCAGCGCGCG ATGATCGCCA TGGCGCTCGC CTGCAAGCCG CGCCTGCTGT TGGCCGACGA GCCGACCACC GCGCTCGACG TCAGGGTGCG CGCGCAGATC CTCGAGTTGC TCGCCGATCT GCAGCGCAAG CATGGCATGG CCGTGCTGCT CATCACGCAC GACCTCAACC TGGTGCGCCG CTTCGCCGAC CGGATTGCCG TGATGGAAGA CGGCCACGTG GTGGAGCAGG GCGCCGTGGC GGCCGTGTTC GAGGCGCCGC AGCACGCCTA CACCCGCAAG CTGATCGACA GCCACCCGGA GCGCGATGTC ATCGCCGTGC CCGCGGGTGC CGGCGCGCGG CCGGTGCTCG AGGCCACCGG CCTGTGTGTG AGCTACCCCG TGCCGCGGCC CGGTTTTGCC GGCTGGTTCC GCAAGGGCGA ATTCATTGCG GTGCAGAACG CGGATTTCCG CATCGCACCG GGCGAAACGC TGGGCGTGGT CGGCGAGTCC GGATCGGGCA AGTCCACGCT GGCGCTGGCC GCCCTCGGGC TGCTGAAGCA CCAGGGCGCG CTCAAGGTGG ACGGCAAGGG CTGGGCGGTG GACCGGAGTT CCGACCTGGC CTTGCGCCGG GTCATGCAGG TGGTTTTCCA GGACCCGTTC TCCTCGCTCT CGCCGCGCAT GACGGTCGAG CAGATCGTGG GCGAGGGGTT GCGCGTGCAC GCGCCTGAGC TCGACACGGC GCAGCGCCGC GCGCGGGCGC TGGCAGCGCT GGCCGACGTG GGCCTGGGCG AGGCGCAGTT TCCCTCGCTG CTCGACCGCT ATCCGCACGA GTTCTCGGGC GGACAGCGCC AGCGGCTCGC GATTGCGCGC GCGCTCATCG TCGACCCGCA GCTGCTGGTG CTCGACGAGC CCACCAGCGC GCTCGACGTG ACCATCCAGA AGCAGGTGCT GGGCCTGCTG CAGCGCCTGC AGCGGGAGCG CGGCCTGAGC TACCTGCTGA TCACGCACGA CGTGGAGGTG ATCCGCGCCA TGGCGCACCA GGTCATCGTG ATGAAGGACG GCGCCATCCT CGAAGCCGGC GCCGTGGAGC GCGTGCTCGA CGCGCCCGAG CACCCCTACA CCAAGAAACT GGTGGCCGCC GCGCTGCTGG AATAG
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Protein sequence | MSQIKHLQPL LDVKELRVAF GGKEVVHGID FRIAAGEKLA LVGESGSGKT VTALSLLRLA QNADVAGAAT LFGSADAPSG RDLLSIPERE LRGIRGKEIA MIFQEPMTAL NALYTVGDQI AEVLELHEGL SARAAQAAAV QLLADTGIPE PARRARAFPH QLSGGQRQRA MIAMALACKP RLLLADEPTT ALDVRVRAQI LELLADLQRK HGMAVLLITH DLNLVRRFAD RIAVMEDGHV VEQGAVAAVF EAPQHAYTRK LIDSHPERDV IAVPAGAGAR PVLEATGLCV SYPVPRPGFA GWFRKGEFIA VQNADFRIAP GETLGVVGES GSGKSTLALA ALGLLKHQGA LKVDGKGWAV DRSSDLALRR VMQVVFQDPF SSLSPRMTVE QIVGEGLRVH APELDTAQRR ARALAALADV GLGEAQFPSL LDRYPHEFSG GQRQRLAIAR ALIVDPQLLV LDEPTSALDV TIQKQVLGLL QRLQRERGLS YLLITHDVEV IRAMAHQVIV MKDGAILEAG AVERVLDAPE HPYTKKLVAA ALLE
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