| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2633 |
|---|
| Symbol | |
|---|
| ID | 7972395 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2778479 |
|---|
| End bp | 2779639 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644793221 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_002944524 |
|---|
| Protein GI | 239815614 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.101063 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGCC GGGCCGCGCC CCGGGGCGCA CTGTGGGCCT TGCTGGCCGG CAATTTCGTG
ATCGGCACGG GCGTGATGGT GGTGCCCGGC ACGCTCAATG AAATCAGCGC GTCGCTGTCT
GTCTCTGTGG CGACTGCGGG CCAGCTGATC ACGGTGGCCG CGGTCGTGAT GTGCCTGGGC
GCGCCGCTGC TGGCGGCAGC TGTCGCAGGC TGGGACCGCC GCCAGCTGCT CGCCCTCACC
CTGCTCTGGT ACGCGGCCGG GCATGCCATT GCGGCGCTGA TGCCGAGCTT CGGTGCCCTG
CTGCCGGTGC GCATGCTCAC GGTGGTGGCG CCCGCCATCT TCACGCCCCA GGCTGCGGCC
TGCGCCGGCA TGCTGGTGCC GCCGGAGCAT CGCGGCCGCG CCGTGACTTT CGTCTTCCTG
GGCTGGTCGC TGGCCTCGGT GCTCGGGCTG CCCATCGGTG CGCTGGTGGG CGGCCATCTC
GGCTGGCGCA TGGCTTTCGG AGCGATCGCG CTGCTGAGCA TCGCCAGTGC GGCATCGATC
TGGCTGACCC TGCCGCAGGG CATCCGCCCC GCGGCGCTGA CGGCGGCCGC CTGGGCGCGC
GTGCTGCGCA GCCCGGTGCT GATGGGCATC GTCTCGGTCA CAGCGCTGCA GGGGGCTGGC
CAGTTCGTGC TGTTCAGCTA TTTCGGGCCG ATCCTGAAGC GGGACTTCGG CGCGGACCCC
ACCATGCTGA GCCTGATGTG GGCGCTGTTC GGCGTGTTCG GCCTTGCGGG CAACATGCTC
GTGAGCCGGT TCATCGACCG CGTGGGCGCG GGCCGCATGG TGCTGCTGAC GAGTTCGCTG
ATCGCGCTGA GCCTCTTCCT TTGGCCATGG GCCGGTACGC TGCCGTGGCT GGCGGCGGTG
CTCGTGCCCT GGGGGCTGGG CTGCTTCGCG ACCAATTCGG CGCAGCAGGC GCGGCTGGTC
GGCCTGGCCC CCGCGCTCGC GCCGGGCTCG GTGGCGCTGA ACAGTTCCGG CATCTATGTC
GGCCAGGCGG TGGGTGCCGG GCTGGGTGGA TGGCTGCTTG CCAACGACGC GGTCGCGTGG
ATGAACTGGG CCGGTTTTGC CCTGCTGCTC GCGGCCATCG GCCTGAGCGT GGCCATCGAC
CGCAGCCGCC GGCCGGCCTG A
|
|---|
| Protein sequence | MSRRAAPRGA LWALLAGNFV IGTGVMVVPG TLNEISASLS VSVATAGQLI TVAAVVMCLG
APLLAAAVAG WDRRQLLALT LLWYAAGHAI AALMPSFGAL LPVRMLTVVA PAIFTPQAAA
CAGMLVPPEH RGRAVTFVFL GWSLASVLGL PIGALVGGHL GWRMAFGAIA LLSIASAASI
WLTLPQGIRP AALTAAAWAR VLRSPVLMGI VSVTALQGAG QFVLFSYFGP ILKRDFGADP
TMLSLMWALF GVFGLAGNML VSRFIDRVGA GRMVLLTSSL IALSLFLWPW AGTLPWLAAV
LVPWGLGCFA TNSAQQARLV GLAPALAPGS VALNSSGIYV GQAVGAGLGG WLLANDAVAW
MNWAGFALLL AAIGLSVAID RSRRPA
|
|---|
| |