| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2562 |
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| Symbol | |
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| ID | 7970039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2702261 |
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| End bp | 2703511 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644793149 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_002944454 |
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| Protein GI | 239815544 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0757424 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGAACA ACAAGCAAAA CCTTTCTTCC GCCGCCCGCA AGGGCCTGTG GCCCGCAGTG
ACCGGCCTCA CCGCACTGCT GGCGGTGGCC GCCGCGGTGC TCGGCATGCA CAGCTTCAAG
GCGGAGGCCA CGGCACCGGC CGCGGCGCAG CAGGGCACGC CGGTCTCGGT GGCCACCGTG
GCTTCGAGCG AGATCAATGC CTGGGACGAG TTCTCGGGCC GGCTCGAGGC GGTGCAGCGC
GTCGACGTGC GCTCCCGCGT GGCGGGAGCC GTGCAGTCGG TGCACTTCCG CGAAGGCGCG
CTGGTGAAGC AGGGCGACCT GCTGATCACC ATCGACCCCG CGCCGTACGC GGCCGAGGTG
GAGCGCGCCG AAGCGCAGGT GGCCTCGGCC CAGGCCCGCC AGGCCTTCAG CCGCAGCGAG
CAGGAGCGCG CCAAGCGCCT GTGGGACCAG CAGGCCATCG CCCAGCGCGA ATACGACGAG
CGCGTGAACG CCGCCCGTGA AGCCGAAGCC AACCTGCGCG CCGCGCAAGC GTCGCTGCAG
TCGGCGCGGC TGAACCTGGG CTACACCCAG GTGCGGGCGC CGGTGGCGGG CCGCATCGGC
AAGCTCGAAG TGACGATGGG CAACCTGGTG GCCGCCGGCC CCGGCGCGCC GGTGCTGACC
ACGCTGGTGT CGGTGAGCCC GATCTACGCG AGCTTCGATG CCGACGAGCA GGTGATCACG
CGGGCCCTGA AGGACCTGCC GAGCGGCGCC AGCGCCCGCG GCCAGATCGA GAGCATTCCC
GTGCAGATGG GCACCGCCGG CCTCGAAGGC ACGCCCTTCA CCGGCAAGCT GCAGCTGATC
GACAACCAGG TCGATGCGCG CAGCGGCACA GTGCGTGTGC GGGCCTCGTT CGACAACAAG
GACGGCGCCC TCATTCCGGG CCAGTTCGCC CGCATCCGCA TGGGCCAGGC GCGCAGCGAC
TCGGCCCTGC TGGTGAGCGA GCGCGCCATC GGCACCGACC AGAACAAGAA GTTCGTGATG
GTGGTGGGCG AGGACAACAA GGCCACGTAC CGCGAAGTCA CGCTCGGCGC ATCGATCAAC
GGGCTGCGCG TGGTGAGCAA GGGCCTGAAG GCCGGCGACC GCGTGGTGGT CAACGGCCTG
CAGCACATCC GCCCCGGTGC GCTGGTGGTG CCGCAGACCG TGACGATGGA CGCCAAGGCC
GACACCAAGC AACAACAACC GGAACGCGTC GCGGAAGCCG CGAAGTCCTG A
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| Protein sequence | MSNNKQNLSS AARKGLWPAV TGLTALLAVA AAVLGMHSFK AEATAPAAAQ QGTPVSVATV
ASSEINAWDE FSGRLEAVQR VDVRSRVAGA VQSVHFREGA LVKQGDLLIT IDPAPYAAEV
ERAEAQVASA QARQAFSRSE QERAKRLWDQ QAIAQREYDE RVNAAREAEA NLRAAQASLQ
SARLNLGYTQ VRAPVAGRIG KLEVTMGNLV AAGPGAPVLT TLVSVSPIYA SFDADEQVIT
RALKDLPSGA SARGQIESIP VQMGTAGLEG TPFTGKLQLI DNQVDARSGT VRVRASFDNK
DGALIPGQFA RIRMGQARSD SALLVSERAI GTDQNKKFVM VVGEDNKATY REVTLGASIN
GLRVVSKGLK AGDRVVVNGL QHIRPGALVV PQTVTMDAKA DTKQQQPERV AEAAKS
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