| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2542 |
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| Symbol | |
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| ID | 7970019 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2685075 |
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| End bp | 2686037 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644793129 |
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| Product | transcriptional regulator, AraC family |
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| Protein accession | YP_002944434 |
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| Protein GI | 239815524 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.602522 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCCGT TGCTCAGCAC CGATGCCGTT CCGCGCGGCC AGCGGCTCGC CTACTGGACC
GACATGATCT GCAACGTCTA CGTGCAGCTC GGATGCGATC CGGTGCGCGA AGGCGATAGC
GGCAATTTCG AAGGCAGCAT CCGCCAGCAC ACGCTGCCGA GCCTGGACGT GTCGGTGGTC
AGGTCAGGAC CGCAGAAGGT GATGCGCACG CCGGGCCACA TCTCGCGCTC GGGCGACGAC
TGCTTTCTGG TCAGCATCCA GGCGCGCGGC CAGGGCGTGG TGCGGCAGGA TGGGCGCGAC
GCCGTGCTGG CGGCGGGCGA CTTCGCGCTG TACGACAGCA CGCGGCCCTA CCAGCTGCTG
TTCGACGACA GCTTCGAGCA GATCGTGCTC AAGCTGCCGG GCGAGCGCCT GCGCAGCGAG
CTGCACCACA CCGAAGCGCT GACGGCCACC ACCGTGTCGG GGCGCGAGGG CGCGGGGCAC
CTGCTGCTGG GCATGATCCG CACGCTGCGC GAGGACATCG ACACCTTGCA GCCGGCGTCG
GCCCTGGCGG TGGCCAACGG CGTGCAGAGC ATTCTCGTGG CCGGGCTGCA GACGCTGCCC
GCGGCGCGCT CACCGGGCCT GAGCAGTCTC ACGGCCTACC ACCTGGCCCG CGTGAAGCGG
CGCATCGACG AGCAGTTGGC GGATCCTTCG CTGTCGGTGG GAAGCCTCGC GGCGCAGCTG
GGCGTCTCGG CGAGCCACAT CCACCGCGTC TTCAAGAGCG AGCCGCTCAC GCCTTCGCAG
TACATCTGGG AGCGCCGGCT CGAAGCCTGC AGCCGCGACC TGCTCGAGGC GCGCCTGGCC
GGCCGGCCCG TGGCCGAGAT TGCCTACGGC CGCGGCTTCA ACGACGCGGC GCATTTCAGC
CGCGCGTTCC GCGAACGCTT CGGCTGCTCG CCGCGCGAAT GGCGGCAGCA GCGCGTGCAA
TAA
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| Protein sequence | MTPLLSTDAV PRGQRLAYWT DMICNVYVQL GCDPVREGDS GNFEGSIRQH TLPSLDVSVV
RSGPQKVMRT PGHISRSGDD CFLVSIQARG QGVVRQDGRD AVLAAGDFAL YDSTRPYQLL
FDDSFEQIVL KLPGERLRSE LHHTEALTAT TVSGREGAGH LLLGMIRTLR EDIDTLQPAS
ALAVANGVQS ILVAGLQTLP AARSPGLSSL TAYHLARVKR RIDEQLADPS LSVGSLAAQL
GVSASHIHRV FKSEPLTPSQ YIWERRLEAC SRDLLEARLA GRPVAEIAYG RGFNDAAHFS
RAFRERFGCS PREWRQQRVQ
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