| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2508 |
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| Symbol | |
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| ID | 7969573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2643093 |
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| End bp | 2644286 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644793091 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_002944400 |
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| Protein GI | 239815490 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGCCT CCTCCGGCTT TTCTCCTCTT GCCCGCAGTG CCGCCTGGCT GCTGCTTCCC
GCCTTGTTCC TGGCCGGCTG TTCGCAGTCG AAGCCGGCCG AGGAACCTGT GCGCGCGGTC
AAGCTGGTGA CTGTGGGCAC CAGCGATTTC GACGCCCAGC CCGAGTTCTC GGCCGAAGTC
CGGGCGCGCG TCGAATCGCG GCTGGGCTTC CGCGTGGCGG GCAAGATCAC CAAGCGCCAG
GCCGAGCTCG GCCAGCACGT GCAGGCCGGC CAGGTGCTGG CGCAGCTCGA TCCGCAGGAC
TACCGGCTGG CCGCTGAAGC GGCGCGCGCG CAGCTGGCGG CGGCCCAGAC CAACCGCGAT
CTCGCGGCAG CCGATCTCAA GCGCTATACC GAACTGCGTA CGCAGAACTT CATCAGCGGC
GCCGAGCTGG AGCGCCGCGA ATCCACCTGG AAGGCCGCGC AGGCGCAGCT CGAGCAGGCG
CAGGCCCAGC TCTCGTCGCA GGGCAACCAG GCCAGCTACA CCACGCTGGT GGCCGACGTG
GCCGGCGTCA TCACCGCCAT CGAGGCCGAG CCCGGCCAGG TGGTGCAGGC GGGCACGCCC
GTCGTGCGCA TTGCGCAGGA CGGCGCGCGC GACGTGGTGT TTGCGGTGCC CGAAGACCGC
GCCGCGCTGA TCAAGCCCGG CTCGCCGGTC ACGGTGCGCG GCTGGTCGGG CGGCAGCGAG
CTGCAAGGCC AGGTGCGCGA GGTGGCGGCC AGCGCCGACG CGGTCACGCG CACCTATGCG
GTCAAGGTGG CGATCGATGC CGCCACCTCG CCGGCGCTCG GCGCCACCGT GTATGCCCGC
CCGCAGGCGC TGGCACGCAC CGGCGGCGCG GTCATGAAGC TGCCGACCAG CGCCTTGCGC
CAGGAAGGCA AGGGCACGGC GGTTTGGGTG CTCGACAAGT CGACCATGAC GGTGCGCTCA
CAGCCCGTGC AGGTGGCCAC GGCCGACGGC AACGAGGCCG TGATCGGCGC CGGCCTCGCG
CCCGGCATGA TGGTCGTGGC GGCGGGCGTG CACGTGCTCT CGCCGGGGCA GAAGGTCACC
ATCTACCAGT CGAAGGAGGC TGCCGCGGCG GCCGCCAACG CGAAGGAATC GGCGCAGCCG
GTCGAGGCCG TGGCGGCCTC GAAGAAGGAG ATCGCTGCAG GTGCTTCCAA ATGA
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| Protein sequence | MTASSGFSPL ARSAAWLLLP ALFLAGCSQS KPAEEPVRAV KLVTVGTSDF DAQPEFSAEV
RARVESRLGF RVAGKITKRQ AELGQHVQAG QVLAQLDPQD YRLAAEAARA QLAAAQTNRD
LAAADLKRYT ELRTQNFISG AELERRESTW KAAQAQLEQA QAQLSSQGNQ ASYTTLVADV
AGVITAIEAE PGQVVQAGTP VVRIAQDGAR DVVFAVPEDR AALIKPGSPV TVRGWSGGSE
LQGQVREVAA SADAVTRTYA VKVAIDAATS PALGATVYAR PQALARTGGA VMKLPTSALR
QEGKGTAVWV LDKSTMTVRS QPVQVATADG NEAVIGAGLA PGMMVVAAGV HVLSPGQKVT
IYQSKEAAAA AANAKESAQP VEAVAASKKE IAAGASK
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