| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2416 |
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| Symbol | |
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| ID | 7970460 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2581314 |
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| End bp | 2582507 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644792998 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002944308 |
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| Protein GI | 239815398 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.672056 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCGTC GCCACCTCGT CGCCCTGGCT GCACTCGCCG CCGGCGCCGC CGCAGCCCCC
GCCTGGGCCC AGTCCAACGA AATCCGCATC GCCCACATCT ACAGCAAGAC CGGTCCGCTC
GAGGCCTACG GCAAGCAGAC CCAGACCGGC CTGATGATGG GCCTGGACTA CGCCACCGGC
GGCACGATGA TGGTCAACGG CAAGAAGCTC GTGGTCATCG AGAAGGACGA CCAGGGCAAG
CCCGACCTGG GCAAGTCGCT GCTCGCCGCC GCGTACTCCG ACGACAAGGC CGCGCTGGCC
GTGGGCCCCA CGGCTTCGGG CGTGGCGCTG GCCATGCTGC CGGTGGCCGA GGAATACAAG
AAGATCCTGG TCGTGGAGCC CGCGGTGGCC GACTCGATCA CCGGCGACAA GTGGAACAAG
TACATCTTCC GCACCGGACG CAATTCGAGC CAGGACGCGA TCAGCAACGC GGTGGCCGCC
GACGCGAGCG ACATCTCCAT GGTCATGCTG GCGCAGGACT GGGCCTTTGG CCGCGATGGC
GTGAAGGCAT TCAAGGACGC GCTGAAGAAG ACCAAGATCG TCCACGAGGA ATATCTGCCG
CCAGCCACAA CCGACTTCAC CGCGGGCATT CAGCGCATGG TCGATGCGCT GAAGGACAAG
CCCGGCCGCA AGGTGATCGC CGTGGTGTGG GCGGGCGCCA CCACCCCTTT CAACGCGCTG
GCCGATGCCG AGCTGAAGAA GCGCTACAAC ATCGACGTGG CCACGGGCGG CAATATTCTG
CCCGCCATGA CTGCGTACAA GCGTTTCCCG GGCATGGAAG GCGCTACGTA CTACTACTTC
GGCATCCCGA AGAACCCCGT CAACGAGGCG CTGGTGGCCG CGCACTACAA GCAGTTCAAG
GCACCGCCGG ACTTCTTCAC GGCCGGCGGC TTCTCGGCCG CAATGGCGGT GGTCACAGCG
CTCAAGAAGA CGGGCGGCGA CACCGGCACC AACAAGCTCA TCGGCGCCAT GGAAGGCATG
AGCTTCGACA CGCCCAAGGG CAAGATGACC TTCCGCAAGG AAGACCACCA GGCGATGCAG
TCGATGTACC ACTTCAAGAT CAAGGCCGAC CCGGCCTTCG CCTGGGGCGT GCCGGAGCTC
GTGCGCGAGA TCAAGCCTGA AGAGATGGAC ATTCCCATCA AGAACAAGAG GTAG
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| Protein sequence | MNRRHLVALA ALAAGAAAAP AWAQSNEIRI AHIYSKTGPL EAYGKQTQTG LMMGLDYATG
GTMMVNGKKL VVIEKDDQGK PDLGKSLLAA AYSDDKAALA VGPTASGVAL AMLPVAEEYK
KILVVEPAVA DSITGDKWNK YIFRTGRNSS QDAISNAVAA DASDISMVML AQDWAFGRDG
VKAFKDALKK TKIVHEEYLP PATTDFTAGI QRMVDALKDK PGRKVIAVVW AGATTPFNAL
ADAELKKRYN IDVATGGNIL PAMTAYKRFP GMEGATYYYF GIPKNPVNEA LVAAHYKQFK
APPDFFTAGG FSAAMAVVTA LKKTGGDTGT NKLIGAMEGM SFDTPKGKMT FRKEDHQAMQ
SMYHFKIKAD PAFAWGVPEL VREIKPEEMD IPIKNKR
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