| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2373 |
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| Symbol | |
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| ID | 7970416 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2534839 |
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| End bp | 2536542 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644792955 |
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| Product | 2-isopropylmalate synthase |
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| Protein accession | YP_002944266 |
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| Protein GI | 239815356 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR00970] 2-isopropylmalate synthase, yeast type |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.410788 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGAAGC AACCTCAAGC CAAATACCGC GCATTCGCCC CGATCGGCCT CAAGGACCGC
ACCTGGCCCG ATGCCGTGCT GACCAAGGCC CCGATCTGGC TGTCGACCGA CCTGCGCGAT
GGCAACCAGG CGCTGGTCGA GCCGATGGAC ATCGCGCGCA AGATGCGCAT GTTCGAGACG
CTGGTGGCGA TCGGCTTCAA GGAAATCGAA GTCGGCTTTC CCTCTGCCTC GCAGATCGAA
TTCGACTTCG TGCGCAAGCT CATCGAGGAA GACCGCATTC CCGACGACGT GACGATCCAG
GTGCTGACGC AGGCGCGCGA CCACCTCATT GCGCGCACCT TCGAATCGCT GCAGGGCGCG
CCGCGCGCCA TCGTCCACCT CTACAACGCG GTGGCTCCCG TGATGCGGCG CGTGGTGCTC
GGCATGGACG AAGACCAGAT CGTCGAACTC GCGAGCAGCC ATGCGCGCAT GTTCAACGAG
TTTGCCGCGA AGCAGCCGAA CACGCAGTGG ACCTTCCAGT ATTCGCCCGA AATGTTCTCG
GGCACCGACG TCGTGTTCTC CAAGCGCGTG GTCGACGCGG TGACGGAAGT CTGGGCGCCG
ACGCCAGAGC GCAAGTGCAT CGTCAACCTG CCCACCACGG TCGAGCATTC CACGCCGAAC
ATCTTTGCCG ACATGATCGA GTGGATGCAC CGCAACCTCG CGCGCCGCGA TTCGATCGTG
CTGTGCGTGC ATCCGCACAA CGACCGCGGC ACCGGCACGG CGGCCGGCGA ACTGGCGCTG
ATGGCGGGGG CCGAGCGCAT CGAGGGCTGC CTGTTCGGCA ATGGCGAGCG CACCGGCAAT
CTCGACCTCG TGAACGTCGC GCTCAACCTC TACACCCAGG GCGTTTCGCC CGAGCTCGAT
TTCTCGAACA TCGACGAGAT CCGCGCGACG GTCGAGCATT GCAACCAGAT CCCGGTGCAT
CCGCGCCATC CGTATGTGGG CGATCTCGTC TACACCTCGT TCTCGGGTTC GCACCAGGAC
GCGATCAAGA AGGCCTTCGC GGCGCGCAAG GACGGCGACA TCTGGGACAT GCCCTACCTG
CCGATCGATC CGAAGGACGT GGGCCGCAGC TACGAGGCCG TGATTCGCGT GAACAGCCAG
TCGGGCAAGG GCGGCATGGC CTACCTGCTC GAGAGCGAAT ACGGCCTCGA GATGCCGCGC
CGCCTGCAGA TGGAATTCAT GCAGACCGTG CAGCGCGTGA TGGACGTGGC CGGCAAAGAG
CTCACTGCCG CCGACCTCTG GGAACTGTTC GTGCGCGAAT ACGGCCTCGA GGCCGCGCAT
TCTTTGCAGC ACCGCGTGAT CGAGGAAGAA GGCGAGGGCG CCAGCGCCTC GGTGGTGCTG
CGCGGCGACC TGCCCTGGGA CGGCGAGATC CGCGCCATCG AAGGCCGCGG CAACGGGCCG
ATCGACGCCT TCACCCAGGC GCTGAGCAAG GCCACGGGCC ATACCGTGCG CGTGATGGAC
TACCACCAGC ACGCCATCGG CGCGGGTGCC GATGCCAAGT CGGTGGCGTA CCTCGAGCTG
CGCGTGGACG AGGCGCAGAC GCTGTTTGGC GTGGGCATCG ACGCGAACGT GATCTCCGCT
TCGCTGAAGG CCATTGTCTC GGGCGTGCAG CGCTCGCGGA CCCGCGGCGC GCACAGCGCA
CAATCGGTGG TTGAGCTCGC CTGA
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| Protein sequence | MLKQPQAKYR AFAPIGLKDR TWPDAVLTKA PIWLSTDLRD GNQALVEPMD IARKMRMFET
LVAIGFKEIE VGFPSASQIE FDFVRKLIEE DRIPDDVTIQ VLTQARDHLI ARTFESLQGA
PRAIVHLYNA VAPVMRRVVL GMDEDQIVEL ASSHARMFNE FAAKQPNTQW TFQYSPEMFS
GTDVVFSKRV VDAVTEVWAP TPERKCIVNL PTTVEHSTPN IFADMIEWMH RNLARRDSIV
LCVHPHNDRG TGTAAGELAL MAGAERIEGC LFGNGERTGN LDLVNVALNL YTQGVSPELD
FSNIDEIRAT VEHCNQIPVH PRHPYVGDLV YTSFSGSHQD AIKKAFAARK DGDIWDMPYL
PIDPKDVGRS YEAVIRVNSQ SGKGGMAYLL ESEYGLEMPR RLQMEFMQTV QRVMDVAGKE
LTAADLWELF VREYGLEAAH SLQHRVIEEE GEGASASVVL RGDLPWDGEI RAIEGRGNGP
IDAFTQALSK ATGHTVRVMD YHQHAIGAGA DAKSVAYLEL RVDEAQTLFG VGIDANVISA
SLKAIVSGVQ RSRTRGAHSA QSVVELA
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