| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2321 |
|---|
| Symbol | |
|---|
| ID | 7971178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2481063 |
|---|
| End bp | 2482136 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644792903 |
|---|
| Product | oxidoreductase domain protein |
|---|
| Protein accession | YP_002944214 |
|---|
| Protein GI | 239815304 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0673] Predicted dehydrogenases and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCCA GAACCCTGCG CGCCGGCCTC GTCGGCTATG GCTTTGCCGG CCAGACCTTC
CATGCGCCGG TGCTTTCGGC CGTGCCCGGG CTCGAACTGG CGGCCGTGGC AAGCTCCCGC
CCGCACAAGG TCCACGCCGA CTGGCCCGGC GTGGCCGTGG TGCCCGATGC GGCCGCGCTC
GTGGGCCGGC CGGACATCGA CCTGGTGGTG GTGGCCACCC CCAACGCCCA GCACCATCCC
GTGGCCAAGG CCGCCCTGGA GGCCGGCAAG CATGTGGTGG TGGACAAGCC GTTCACGCTC
GACGTGGCCG AAGCCAGGGA GCTCGAATTG TTGGCTCGGC GCAACAATCG TGTGCTGGCG
GTCTATCAGA ACCGGCGTTT CGACGCCGAC TACCTCACGC TCAAGGACCT GCTGGCGAGC
GGAGAACTCG GCCGGCTGGT GTACCTGGAA TCGCATTTCG ACCGCTTTCG CCCCGAGGTG
CGCGACCGCT GGCGCGAGCA GAAGGTGCCG GGCGCGGGCC TCTGGGTCGA CCTGGGCGCT
CATCTGGTCG ACCAGGCGGT CCAGCTGTTC GGAAGGCCCG ACACGCTGCA GCTCGACACC
GCGGCCTTGC GCGACGGCGC GCAGGTCGAG GACTATTTCC ACGCCGTGCT GCGCTACGAA
AGCGGCCCGC ATGCACCGCT GCGCGTGGTG CTGCACGCCA CCACGCTTGC CGCCCATGCC
GCGCCGCGCT ACATCGTCCA TGGCACGCGC GGCAGCTACA TCAAGCACGG CGTCGATCCG
CAGGAAGACG CGCTGCGTGC CGGCCAGCGG CCGCCGATGG CGGGGTGGGG CGCCGATCCG
CAGGACGGCG AACTCGTGGT GCCCGCCAGC GACGGCGGCG AGCCGCAGCG CCGGGTCTGG
CCCACGCGGG CCGGCAACTA CCTCGACTAC TACGCCGCGG TGCGCGACGC GATCCTGGGC
AACGGCCCGA ACCCGGTGCC GCCCGAACAG GCTGTCGCGC TGATGGAACT GCTCGACATC
GGCCAGCAGA GCGCGGCCGA GGGCCGGGCG ATCCGCATCA TCGACCGCCC ATGA
|
|---|
| Protein sequence | MTSRTLRAGL VGYGFAGQTF HAPVLSAVPG LELAAVASSR PHKVHADWPG VAVVPDAAAL
VGRPDIDLVV VATPNAQHHP VAKAALEAGK HVVVDKPFTL DVAEARELEL LARRNNRVLA
VYQNRRFDAD YLTLKDLLAS GELGRLVYLE SHFDRFRPEV RDRWREQKVP GAGLWVDLGA
HLVDQAVQLF GRPDTLQLDT AALRDGAQVE DYFHAVLRYE SGPHAPLRVV LHATTLAAHA
APRYIVHGTR GSYIKHGVDP QEDALRAGQR PPMAGWGADP QDGELVVPAS DGGEPQRRVW
PTRAGNYLDY YAAVRDAILG NGPNPVPPEQ AVALMELLDI GQQSAAEGRA IRIIDRP
|
|---|
| |