Gene Vapar_2136 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2136 
Symbol 
ID7973822 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp2281046 
End bp2281684 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content69% 
IMG OID644792723 
ProductLysine exporter protein (LYSE/YGGA) 
Protein accessionYP_002944037 
Protein GI239815127 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCTCG ACACGCTGCT GATCTACCTC GTCGCTTCGC TCGCGCTGGC CGTCATTCCC 
GGCCCGACGA TGCTGCTGGC GCTCTCCAAC GGCATCGACG GCGGCATGCG CCGCGCGAGC 
TGGGGCATTG CCGGCGCGTC GCTCGGGAGC ATCACGCTGA TCGCGGTGGT TGCGCTCGGG 
CTCGGTTCGT TGCTCGCCGC ATCGGAACTG CTCTTCAACG CGATCCGCGT GGCGGGTGTC 
GCCTACCTGG TCTGGCTCGG CGTCAAGCTG TGGCGCAGCG AAGGGGCCGA CCTTGGCGCT 
GCGCTGGCCA AGTCCGCCAT CGAAGTTCGC CCGCATGGCC GCGTCGCGCT CATGCGCAGC 
CTGCTCGTGG CGCTGTCGAA TCCCAAGACC GTGCTGTTCT TCGCGGCCTT TTTGCCGCAG 
TTCATCGACA TCACAAGGCC GCAAGGCACG CAGTACCTGC TGCTCGGCGC GATCTTCGTG 
GCGCTCGACA CCTGCGTGAT GCTGGCCTAT GCGGCCGCCG GAACGCAGGC CGTGCGCTGG 
CTCTCGCGCC GCGGCCTCAA GGCGCTGAAC CGCAGCTGCG CGGCCGGCAT GTGGCTGCTG 
GCCGCCACGC TGGCCTTCTG GCGCCGCCCG GGCACCTGA
 
Protein sequence
MTLDTLLIYL VASLALAVIP GPTMLLALSN GIDGGMRRAS WGIAGASLGS ITLIAVVALG 
LGSLLAASEL LFNAIRVAGV AYLVWLGVKL WRSEGADLGA ALAKSAIEVR PHGRVALMRS 
LLVALSNPKT VLFFAAFLPQ FIDITRPQGT QYLLLGAIFV ALDTCVMLAY AAAGTQAVRW 
LSRRGLKALN RSCAAGMWLL AATLAFWRRP GT